Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006790.1 Hibiscus syriacus cultivar Beakdansim tig00017219_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 79031
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Found at i:2481 original size:42 final size:41
Alignment explanation
Indices: 2434--2528 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 41
2424 AATTGGTAAG
*
2434 TCCTTCGGGCCAACAGTAAGTCTTTCGAGCATGATGATTAAA
1 TCCTTCGGGCCAACAGTAAGTCTTTCGAGCAAGATGA-TAAA
* * * * * *
2476 TCCTTCTGGTCATCTGTCAGTCTTTCGAGCAAGATGATAAG
1 TCCTTCGGGCCAACAGTAAGTCTTTCGAGCAAGATGATAAA
*
2517 TCCATCGGGCCA
1 TCCTTCGGGCCA
2529 TCCGTAAGAC
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
41 12 0.28
42 31 0.72
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (41 bp):
TCCTTCGGGCCAACAGTAAGTCTTTCGAGCAAGATGATAAA
Found at i:7862 original size:2 final size:2
Alignment explanation
Indices: 7855--7891 Score: 58
Period size: 2 Copynumber: 18.5 Consensus size: 2
7845 ATGGATTGCT
7855 TA TA TA TA -A TA TGA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T
7892 TTATTTAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 30 0.91
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7956 original size:2 final size:2
Alignment explanation
Indices: 7949--7989 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7939 TCAATCTACA
7949 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7990 ATTTACGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8111 original size:85 final size:85
Alignment explanation
Indices: 8009--8174 Score: 203
Period size: 85 Copynumber: 2.0 Consensus size: 85
7999 ATACAATCAC
* * * *
8009 GACACAAGAATGTGTGTCATCTT-TTTTAATGACGTGTGCTTCAATGACACGCAATGTA-AGTCA
1 GACACAAGAATGTGTGTCATCTTCATTT-ATGACGGGGGCATCAATGACACGCAATG-AGAGTCA
* *
8072 TACATGCGTGTCATAAATTTAT
64 TAAATGCGCGTCATAAATTTAT
* * *
8094 GACACATA-AATGTGTGTCATCTTCATTTATGACGGGGGCATCAATGACATGCATTGAGCGTCAT
1 GACACA-AGAATGTGTGTCATCTTCATTTATGACGGGGGCATCAATGACACGCAATGAGAGTCAT
8158 AAATGCGCGTCATAAAT
65 AAATGCGCGTCATAAAT
8175 GCACGTCATA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
84 1 0.01
85 64 0.93
86 4 0.06
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (85 bp):
GACACAAGAATGTGTGTCATCTTCATTTATGACGGGGGCATCAATGACACGCAATGAGAGTCATA
AATGCGCGTCATAAATTTAT
Found at i:8169 original size:13 final size:13
Alignment explanation
Indices: 8151--8184 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
8141 CATGCATTGA
8151 GCGTCATAAATGC
1 GCGTCATAAATGC
8164 GCGTCATAAATGC
1 GCGTCATAAATGC
*
8177 ACGTCATA
1 GCGTCATA
8185 GATTTATGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (13 bp):
GCGTCATAAATGC
Found at i:15666 original size:60 final size:60
Alignment explanation
Indices: 15589--15720 Score: 183
Period size: 60 Copynumber: 2.2 Consensus size: 60
15579 AAGTATACAT
15589 ATGGTCTCCCGACTATAGGACACTGCTTTGTTGAGTCCCCCGACTATTAAAAGTTATAAA
1 ATGGTCTCCCGACTATAGGACACTGCTTTGTTGAGTCCCCCGACTATTAAAAGTTATAAA
* * **** * *
15649 ATGGTCTTCCGATTATAGGTTGTTGCTTTTTTGAGTCCCTCGACTATTAAAAGTTATAAA
1 ATGGTCTCCCGACTATAGGACACTGCTTTGTTGAGTCCCCCGACTATTAAAAGTTATAAA
*
15709 ATGGTCACCCGA
1 ATGGTCTCCCGA
15721 TAACTTTATG
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (60 bp):
ATGGTCTCCCGACTATAGGACACTGCTTTGTTGAGTCCCCCGACTATTAAAAGTTATAAA
Found at i:18090 original size:14 final size:14
Alignment explanation
Indices: 18066--18109 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
18056 CTTGTATTTA
*
18066 TTTATTAAATATGTT
1 TTTA-TAAATATATT
*
18081 TTTATAAATATATC
1 TTTATAAATATATT
18095 TTTA-AAATATATT
1 TTTATAAATATATT
18108 TT
1 TT
18110 ACTCACATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 10 0.38
14 12 0.46
15 4 0.15
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (14 bp):
TTTATAAATATATT
Found at i:18628 original size:22 final size:23
Alignment explanation
Indices: 18594--18648 Score: 94
Period size: 22 Copynumber: 2.4 Consensus size: 23
18584 TTAATAATTA
*
18594 TGTCTCTATGACACGTCTTCTTC
1 TGTCTTTATGACACGTCTTCTTC
18617 TGT-TTTATGACACGTCTTCTTC
1 TGTCTTTATGACACGTCTTCTTC
18639 TGTCTTTATG
1 TGTCTTTATG
18649 TCATATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 21 0.70
23 9 0.30
ACGTcount: A:0.13, C:0.24, G:0.15, T:0.49
Consensus pattern (23 bp):
TGTCTTTATGACACGTCTTCTTC
Found at i:19003 original size:25 final size:24
Alignment explanation
Indices: 18962--19010 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
18952 TCAATTTTAT
*
18962 TTGGTTAGGTTTGTTAACCTTTTC
1 TTGGTTAGGTTTGTTAACATTTTC
* *
18986 TTGGTTAGATTTTTTTAACATTTTC
1 TTGGTTAG-GTTTGTTAACATTTTC
19011 CTTATATGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.16, C:0.10, G:0.16, T:0.57
Consensus pattern (24 bp):
TTGGTTAGGTTTGTTAACATTTTC
Found at i:20037 original size:59 final size:59
Alignment explanation
Indices: 19886--20497 Score: 1019
Period size: 59 Copynumber: 10.4 Consensus size: 59
19876 CACATTTCCC
* * * *
19886 ATATGGAAATTCATACACTTAGTATGAATTCCTTAATAGTTTAGCATACGAAGTACCAT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
*
19945 GTATGG-AATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
20003 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
* *
20062 ATATGGAAATTCATACACTTAGTATGAATTCCTTAATAGTTTAGCACACGAAGTGCCAT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
*
20121 GTATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
20180 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
* * *
20239 ATCTGGAAATTCATACACGTAGTATGAATTCCTTAACAATTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
* * * * *
20298 ATCTGGAAATTCATACACTTAGTTTGAATTCCTTAACAGTTTAGCATATGAAGTGCACT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
* * * *
20357 GTATGGAAATTCATACACTTAGTATGAATTCCTTAATAGTTTAGCATACGAAGTGCTCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
* *
20416 GTATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACAAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
20475 ATATGGAAATTCATACACTTAGT
1 ATATGGAAATTCATACACTTAGT
20498 CATTTAATAC
Statistics
Matches: 520, Mismatches: 32, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
58 53 0.10
59 467 0.90
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (59 bp):
ATATGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCT
Found at i:23473 original size:59 final size:59
Alignment explanation
Indices: 22831--23465 Score: 984
Period size: 59 Copynumber: 10.8 Consensus size: 59
22821 AATTCCCATA
* * * * *
22831 TGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACAAAGTGCCCTATA
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
* * * *
22890 TGGAAATTCATACACTTAGTATGAATTCCTTAACACTTTAGCACACGAAGTGCCCTATA
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
* * *
22949 TGGAAATTCATACACTTAGTATGAATTCCTTAACAGTTTAGCACACGAAGTGCCCTATC
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
* * ** * *
23008 TGGAAATTCATACACTTAGTAAGAATTCCTTAATAGTTTAGCACACGAAGTGCCCTATA
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
* ** *
23067 TGGAAATTCATACACTTAGTATGAATTCCTTAATAGTTTAGCACACGAAGTGCCCTATC
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
* *
23126 TGGAAATTCATACACTTAGTATGATTTCCTTACCTTTTTACCACACGAAGTGCCCTATC
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
*
23185 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACATGAAGTGCCCTATC
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
*
23244 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACCAAGTG-CCTATC
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
* *
23302 TGGAAATTCATACACTTAGTATGATTTCCTTTCCATTTTAGCACACGAAGTGCCCTATT
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
* * *
23361 TGGAAATTCATACAATTTGTATGATTTCCTTACCATTTTAGCACATGAAGTGCCCTATC
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
23420 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACAC
1 TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACAC
23466 TTAGTGCCAT
Statistics
Matches: 544, Mismatches: 31, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
58 56 0.10
59 488 0.90
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34
Consensus pattern (59 bp):
TGGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACGAAGTGCCCTATC
Found at i:23935 original size:22 final size:20
Alignment explanation
Indices: 23890--23935 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
23880 ATGTTGCCTA
*
23890 GTATCGATACCCTTACCATG
1 GTATCGATACCCATACCATG
*
23910 GTATCGATACTACCATACTATG
1 GTATCGATAC--CCATACCATG
23932 GTAT
1 GTAT
23936 GGTACCAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (20 bp):
GTATCGATACCCATACCATG
Found at i:23983 original size:100 final size:100
Alignment explanation
Indices: 23843--24023 Score: 278
Period size: 100 Copynumber: 1.8 Consensus size: 100
23833 TAGGGTATCG
*
23843 ATACCCCCTTCCGGTATCGATACCAATTTTAGACTTGATGTTGCCTAG-TATCGATACCCTTACC
1 ATACCCCCTTCAGGTATCGATACCAATTTTAGACTTGATGTTG-CTAGCTATCGATACCCTTACC
23907 ATGGTATCGATACTACCATACTATGGTATGGTACCA
65 ATGGTATCGATACTACCATACTATGGTATGGTACCA
* * *
23943 ATACCCCCTTCTAGG-ATCGATACCAATTTTAGA-TTCGATGTTGCTTGCTATCGATATCCTTAT
1 ATACCCCCTTC-AGGTATCGATACCAATTTTAGACTT-GATGTTGCTAGCTATCGATACCCTTAC
24006 CATGGTATCGATACTACC
64 CATGGTATCGATACTACC
24024 TATTCGGTAT
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
99 5 0.07
100 67 0.91
101 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (100 bp):
ATACCCCCTTCAGGTATCGATACCAATTTTAGACTTGATGTTGCTAGCTATCGATACCCTTACCA
TGGTATCGATACTACCATACTATGGTATGGTACCA
Found at i:25111 original size:20 final size:20
Alignment explanation
Indices: 25086--25139 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
25076 ATTTTAATAT
25086 GGTAGTACCGATACTGCTAA
1 GGTAGTACCGATACTGCTAA
*
25106 GGTAGTACCGATACTTCTAA
1 GGTAGTACCGATACTGCTAA
* *
25126 GGCAGTACCAATAC
1 GGTAGTACCGATAC
25140 CATGCTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (20 bp):
GGTAGTACCGATACTGCTAA
Found at i:26734 original size:15 final size:15
Alignment explanation
Indices: 26710--26740 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26700 GTAAAAGAAG
26710 AAGATCAAGAAAAGA
1 AAGATCAAGAAAAGA
*
26725 AAGATGAAGAAAAGA
1 AAGATCAAGAAAAGA
26740 A
1 A
26741 GGAAATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.03, G:0.23, T:0.06
Consensus pattern (15 bp):
AAGATCAAGAAAAGA
Found at i:51666 original size:30 final size:31
Alignment explanation
Indices: 51628--51696 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 31
51618 CTTTAATGTT
*
51628 TGAGCTAGTTCTAGAGTGAATGAGCTGGATG
1 TGAGCTAGTTCTAGAGTGAATGAGCTGGAGG
* * *
51659 T-AGCTAGTTTTAGGGTGAATGAGTTGGAGG
1 TGAGCTAGTTCTAGAGTGAATGAGCTGGAGG
51689 TGAGCTAG
1 TGAGCTAG
51697 CCATAGGTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 26 0.79
31 7 0.21
ACGTcount: A:0.25, C:0.07, G:0.38, T:0.30
Consensus pattern (31 bp):
TGAGCTAGTTCTAGAGTGAATGAGCTGGAGG
Found at i:63851 original size:24 final size:25
Alignment explanation
Indices: 63804--63862 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
63794 ATTTGTTTAC
*
63804 AATTTTATTTTAAGCTTCCAAAAAA
1 AATTTAATTTTAAGCTTCCAAAAAA
63829 AATTTAATTTTAAGCTTCC-AAAAA
1 AATTTAATTTTAAGCTTCCAAAAAA
63853 AATTTAATTT
1 AATTTAATTT
63863 CCAATTCACC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 15 0.45
25 18 0.55
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.42
Consensus pattern (25 bp):
AATTTAATTTTAAGCTTCCAAAAAA
Found at i:66490 original size:18 final size:18
Alignment explanation
Indices: 66445--66497 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
66435 ACTGAATATT
*
66445 TGTCCCGAAGGACAACTA
1 TGTCCCGAAGGACCACTA
**
66463 TGTCTTGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
66481 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
66498 GATAATCCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:73487 original size:17 final size:18
Alignment explanation
Indices: 73465--73504 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
73455 GGTCACAACC
*
73465 TGACCCGACCCGACC-GT
1 TGACCCGACCCAACCTGT
73482 TGACCCGACCCAACCTGT
1 TGACCCGACCCAACCTGT
73500 TGACC
1 TGACC
73505 GTTGCCCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.20, C:0.45, G:0.20, T:0.15
Consensus pattern (18 bp):
TGACCCGACCCAACCTGT
Found at i:76416 original size:32 final size:31
Alignment explanation
Indices: 76342--76461 Score: 86
Period size: 31 Copynumber: 3.9 Consensus size: 31
76332 CTAATGTGAC
* * *
76342 TCTTAGGTAGGCTCTGCGGCCCTGAGATCAT
1 TCTTAGGTAGGCCCTACGGCCCTAAGATCAT
**
76373 TCTCGGGTAGGCCCTACGGCCCTAAGAT-ATGT
1 TCTTAGGTAGGCCCTACGGCCCTAAGATCA--T
* * *
76405 TCTTAGGTAGGCCCCACGACCC-AAAATC-T
1 TCTTAGGTAGGCCCTACGGCCCTAAGATCAT
* *
76434 ATCTTGGGTAGGCTCT-CAGGCCCTAAGA
1 -TCTTAGGTAGGCCCTAC-GGCCCTAAGA
76462 AGTTCCCTTA
Statistics
Matches: 68, Mismatches: 15, Indels: 12
0.72 0.16 0.13
Matches are distributed among these distances:
29 2 0.03
30 17 0.25
31 30 0.44
32 19 0.28
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (31 bp):
TCTTAGGTAGGCCCTACGGCCCTAAGATCAT
Found at i:78641 original size:16 final size:17
Alignment explanation
Indices: 78620--78655 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
78610 ATTTTGACCG
78620 AAATTCC-AATTTCCGA
1 AAATTCCAAATTTCCGA
*
78636 AAATTCCAAATTTCTGA
1 AAATTCCAAATTTCCGA
78653 AAA
1 AAA
78656 GTCATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (17 bp):
AAATTCCAAATTTCCGA
Done.