Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006791.1 Hibiscus syriacus cultivar Beakdansim tig00017220_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80646

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13801--13941
63
2.2
63
81
6
151
20
28
24
26
1.99
14627--14705
35
2.2
36
90
2
124
26
2
37
32
1.70
18440--18474
16
2.1
18
89
10
56
65
0
17
17
1.27
19101--19168
35
1.9
36
96
3
129
26
4
38
30
1.76
19096--19179
35
2.4
35
85
2
123
26
3
40
29
1.73
22072--22142
35
2.0
35
97
0
133
49
2
35
12
1.56
22084--22155
35
2.1
34
82
7
85
51
1
36
11
1.46
24908--24934
13
2.1
13
100
0
54
40
7
14
37
1.74
26489--26561
31
2.4
29
80
10
83
50
1
4
43
1.29
26637--26691
2
27.0
2
90
7
85
49
1
1
47
1.23
27102--27556
235
1.9
235
89
5
711
29
11
17
42
1.84
27906--27970
18
3.7
18
85
2
87
27
29
7
35
1.85
35870--36048
72
2.5
71
87
3
259
25
16
13
44
1.85
45586--45618
16
2.1
16
94
0
57
45
0
9
45
1.35
45692--45954
62
4.2
62
98
0
499
45
10
3
40
1.55
49102--49136
18
1.9
18
88
0
52
31
2
2
62
1.24
49158--49200
22
2.0
22
90
0
68
46
9
2
41
1.48
49997--50047
21
2.4
21
86
0
75
27
23
19
29
1.98
64802--65055
56
4.4
57
83
6
273
42
10
10
37
1.74
65889--66022
36
3.8
35
79
3
151
20
23
18
37
1.94
68440--68576
59
2.3
59
89
1
211
23
17
11
47
1.80
69116--69159
21
2.1
21
91
0
70
27
18
22
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69120--69167
21
2.3
22
82
10
64
27
14
25
33
1.94
69162--69209
20
2.4
20
89
0
69
8
25
20
45
1.79
69854--69894
5
7.6
5
97
2
55
0
19
53
26
1.45
69857--69898
6
7.5
6
97
2
63
0
16
54
28
1.42
71145--71176
12
2.7
12
95
0
55
34
0
37
28
1.57
72113--72150
16
2.5
15
87
8
51
18
5
13
63
1.48
73855--73906
21
2.5
21
90
0
77
46
23
0
30
1.53

Tables:   1

The End!