genome.fa.s6792.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006792.1 Hibiscus syriacus cultivar Beakdansim tig00017221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105982

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12536--12614	31	2.6	31	92	6	126	46	13	16	22	1.82
15483--15521	15	2.4	17	87	8	55	46	5	0	48	1.24
27139--27186	23	2.1	23	84	7	62	22	20	33	22	1.97
33087--33139	19	2.7	19	97	2	97	41	7	11	39	1.69
43349--43377	2	15.0	2	92	7	51	51	0	0	48	1.00
43367--43544	21	8.8	21	66	19	78	46	7	2	43	1.43
43463--43545	22	3.8	22	72	13	73	44	8	0	46	1.33
43488--43545	23	2.5	23	86	5	73	41	10	0	48	1.37
44794--44836	21	2.0	21	90	0	68	32	27	23	16	1.96
44863--44900	19	2.0	19	89	0	58	23	34	31	10	1.89
45382--45599	103	2.1	103	92	0	373	26	12	23	37	1.91
45624--45667	23	1.9	23	90	0	70	20	27	27	25	1.99
51722--51764	21	2.0	21	90	0	68	32	27	23	16	1.96
51789--51829	20	2.0	20	85	0	55	26	31	31	9	1.89
52311--52528	103	2.1	103	95	0	400	25	12	24	37	1.91
52545--52607	23	2.7	23	87	4	92	20	25	28	25	1.99
56585--56791	103	2.0	103	97	0	387	23	17	16	42	1.89
57391--57435	22	2.0	22	95	0	81	33	0	15	51	1.44
63268--63307	16	2.6	16	88	4	55	30	20	12	37	1.89
63616--63662	15	3.1	15	78	0	58	48	2	0	48	1.13
63637--63678	20	2.0	20	86	4	57	47	0	2	50	1.14
63823--63872	24	2.0	25	92	3	84	18	12	6	64	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64686--64723	20	1.9	20	84	10	51	28	7	13	50	1.69
67078--67105	5	5.6	5	100	0	56	0	39	0	60	0.97
67971--68032	28	2.1	29	85	11	83	58	0	11	30	1.33
75925--75978	24	2.2	24	93	0	90	20	18	20	40	1.91
78393--78466	20	3.7	21	85	7	109	33	24	21	20	1.97
78438--78533	33	2.9	34	88	3	140	40	19	23	15	1.90
78471--78537	20	3.7	19	72	22	72	44	19	22	13	1.85
78660--78696	14	2.6	14	86	0	56	48	21	0	29	1.50
80052--80163	42	2.7	42	76	5	111	22	18	37	21	1.94
80651--80729	20	4.0	20	96	0	140	37	20	20	21	1.94
80776--80913	20	7.5	20	74	18	138	18	20	21	39	1.92
80760--80913	54	2.9	53	83	3	175	18	20	21	40	1.92
80796--80890	34	2.8	34	96	0	172	14	21	22	42	1.89
82789--82875	20	4.4	20	82	1	86	45	21	16	16	1.84
82888--82936	20	2.5	20	82	0	62	20	18	24	36	1.94
83505--83635	20	6.6	20	87	1	102	24	19	18	37	1.94
83503--83635	40	3.3	40	89	2	196	25	19	18	36	1.94
84063--84701	322	2.0	316	94	3	1129	24	12	22	40	1.89
86219--86412	96	2.0	96	86	2	273	27	15	24	32	1.95
90334--90385	18	3.1	18	72	16	65	17	11	34	36	1.86
90334--90400	30	2.1	30	91	8	107	16	11	34	37	1.85
90354--90400	15	3.1	15	82	11	69	14	12	34	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90599--90635	18	2.1	18	100	0	74	10	24	32	32	1.90
94070--94123	22	2.4	22	84	3	81	55	12	3	27	1.54
95422--95464	14	3.1	14	82	0	59	69	0	2	27	1.00
95642--95703	29	2.2	29	88	2	90	41	8	9	40	1.67
96651--96682	3	10.7	3	93	0	55	62	0	3	34	1.11
99250--99325	27	2.7	28	85	8	100	14	10	28	46	1.78
99951--99986	16	2.2	16	95	0	63	25	27	5	41	1.77

Tables:   1

The End!