genome.fa.s6793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006793.1 Hibiscus syriacus cultivar Beakdansim tig00017222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75875

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4075--4143	31	2.2	31	89	0	102	37	10	7	44	1.66
14281--14345	30	2.1	31	83	8	80	30	4	7	56	1.48
14715--14758	20	2.2	20	95	0	79	47	9	18	25	1.77
14721--14767	20	2.3	20	85	0	67	55	8	12	23	1.64
14956--15019	34	1.9	34	83	3	85	50	3	1	45	1.27
15968--15997	15	1.9	16	93	6	53	26	30	6	36	1.82
17683--17740	27	2.1	27	90	0	89	50	1	8	39	1.43
21353--21631	74	3.7	74	80	9	293	49	10	10	29	1.71
22753--22876	49	2.6	48	88	3	169	30	16	23	29	1.97
25772--25935	75	2.3	73	80	7	190	51	10	10	26	1.69
25794--25974	75	2.5	73	81	5	238	50	11	9	29	1.69
27929--28086	72	2.2	72	85	5	205	42	25	18	12	1.86
43208--43319	35	3.2	34	87	5	152	42	20	0	35	1.58
44376--44487	35	3.2	34	88	5	161	33	0	22	42	1.60
46387--46413	3	9.0	3	100	0	54	0	33	0	66	0.92
50448--50524	22	3.5	22	87	0	109	16	42	18	22	1.89
56066--56099	16	2.2	16	89	5	52	35	11	8	44	1.72
58512--58615	44	2.3	44	90	6	156	36	6	24	32	1.81
59363--59486	42	3.0	42	84	4	160	26	31	14	27	1.95
59658--59720	21	3.0	21	88	4	83	17	6	36	39	1.75
59685--59731	21	2.2	21	84	0	58	19	4	36	40	1.71
60031--60078	21	2.3	21	92	0	78	22	35	10	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60043--60155	21	5.4	21	78	4	84	22	34	14	29	1.93
60056--60159	42	2.5	42	79	3	120	22	36	13	27	1.92
62408--62459	24	2.2	24	85	0	68	36	17	17	28	1.92
63363--63457	20	4.8	20	73	12	79	43	9	23	24	1.83
63356--63457	40	2.6	39	78	12	118	42	9	22	25	1.84
63363--63492	60	2.1	62	81	13	146	40	10	23	26	1.85
63485--63534	20	2.5	20	93	0	82	16	14	24	46	1.83
69414--69454	16	2.6	16	92	0	73	70	4	17	7	1.28

Tables:   1

The End!