Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006794.1 Hibiscus syriacus cultivar Beakdansim tig00017223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67858

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5600--5661
26
2.4
26
89
7
99
35
3
29
32
1.73
5600--5661
27
2.4
27
91
5
101
35
3
29
32
1.73
9835--9990
60
2.6
59
81
11
176
32
20
5
41
1.76
15671--15724
24
2.3
23
81
12
65
53
0
0
46
1.00
15910--15935
12
2.2
12
100
0
52
57
0
0
42
0.98
16345--16393
23
2.2
21
82
13
55
61
2
2
34
1.19
16702--16751
19
2.6
19
96
0
91
32
6
42
20
1.76
19752--19815
29
2.2
29
91
0
110
32
25
7
34
1.84
25194--25255
10
6.4
9
76
12
61
16
25
27
30
1.96
25208--25260
19
2.8
19
88
2
72
16
22
26
33
1.96
25277--25319
22
2.0
22
90
0
68
20
41
23
13
1.88
32556--32634
9
8.3
9
75
10
59
15
25
27
31
1.95
32555--32630
19
3.9
20
75
11
77
15
23
27
32
1.95
35908--35984
31
2.5
31
78
2
82
27
29
27
15
1.96
35861--35984
63
2.0
63
82
6
153
25
27
28
18
1.98
36860--36962
29
3.6
29
89
0
152
32
21
5
40
1.77
41980--42288
47
6.6
47
93
2
507
22
24
10
43
1.84
45517--45572
2
28.0
2
96
0
94
50
3
0
46
1.19
47910--47967
30
1.9
30
82
6
73
43
3
6
46
1.47
49939--49984
24
1.9
24
100
0
92
21
15
23
39
1.92
54164--54214
6
8.5
6
80
0
57
47
0
45
7
1.32
59153--59207
21
2.8
19
76
10
56
23
14
20
41
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62477--62509
17
2.0
17
88
5
50
51
12
3
33
1.54
65470--65510
20
2.0
21
95
4
75
34
4
39
21
1.75

Tables:   1

The End!