Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000680.1 Hibiscus syriacus cultivar Beakdansim tig00001320_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55781

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16991--17016
8
3.2
8
100
0
52
11
0
11
76
1.01
17028--17060
14
2.4
14
95
5
59
45
0
0
54
0.99
21230--21270
21
2.0
21
85
0
55
34
4
17
43
1.70
27027--27205
74
2.4
73
87
6
243
43
2
7
46
1.46
27027--27374
38
9.4
36
74
15
196
41
3
8
47
1.50
27027--27303
38
7.5
36
78
13
208
41
3
8
46
1.50
27027--27302
74
3.7
72
79
12
242
42
3
7
46
1.49
27383--27435
19
2.8
19
74
2
54
26
1
0
71
0.96
27441--27472
12
2.7
12
90
0
55
37
25
28
9
1.87
28515--28543
13
2.1
14
93
6
51
13
3
0
82
0.79
28565--28645
11
7.0
11
73
24
69
23
4
0
71
1.05
32386--32503
46
3.0
36
75
22
130
16
36
24
22
1.94
32402--32492
46
2.0
45
95
2
164
15
35
24
25
1.94
32480--32566
29
3.0
29
63
17
72
17
37
24
20
1.93
32558--32636
29
2.7
29
92
0
122
10
25
32
31
1.89
35078--35125
15
3.2
14
76
23
53
45
0
16
37
1.48
35068--35119
16
3.2
17
77
22
67
44
0
19
36
1.51
45992--46037
25
1.9
24
83
16
60
28
2
4
65
1.23
54679--54709
2
15.5
2
100
0
62
51
0
0
48
1.00
55138--55217
42
1.9
42
85
10
110
28
0
1
70
0.96
55161--55212
25
2.0
26
92
7
88
30
0
1
67
1.02
55137--55200
16
3.8
17
78
12
53
31
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55175--55224
16
3.2
16
83
13
52
26
0
4
70
1.05
55126--55212
9
10.1
9
69
14
58
31
0
2
66
1.04
55129--55234
42
2.5
42
78
14
105
29
0
2
67
1.04
55235--55268
16
2.2
16
89
5
52
35
0
5
58
1.22

Tables:   1

The End!