Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006801.1 Hibiscus syriacus cultivar Beakdansim tig00017262_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105815

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1590--1653
19
3.2
20
75
18
62
54
1
1
42
1.19
1590--1660
20
3.5
19
79
11
72
54
1
1
42
1.17
1650--1732
37
2.2
37
83
14
100
57
1
0
40
1.06
1683--1723
12
3.4
12
80
12
57
65
2
0
31
1.05
1650--1787
61
2.4
57
87
8
190
57
1
0
41
1.08
2466--2555
41
2.2
41
86
7
121
38
5
14
41
1.69
4118--4156
9
4.3
9
83
9
53
56
0
2
41
1.13
4113--4153
19
2.1
19
86
9
55
56
0
2
41
1.13
4173--4197
11
2.3
11
100
0
50
84
0
0
16
0.63
12049--12130
29
2.8
29
83
9
103
53
18
14
13
1.72
19162--19218
24
2.4
25
76
8
64
45
15
19
19
1.85
30534--30606
29
2.5
28
72
14
67
50
1
24
23
1.57
31275--31316
22
2.0
21
85
4
57
64
7
9
19
1.46
31791--31920
69
1.9
69
86
0
188
33
9
13
43
1.76
31887--32006
62
2.0
61
89
1
186
31
13
8
46
1.72
33023--33074
20
2.6
20
93
0
86
19
15
25
40
1.90
34724--34766
21
2.0
21
90
0
68
32
27
23
16
1.96
34789--34833
23
2.0
22
87
8
65
28
35
26
8
1.87
36416--36633
103
2.1
103
94
0
382
26
13
23
36
1.92
36643--36717
23
3.3
23
87
3
100
24
20
24
32
1.98
49021--49054
17
1.9
18
88
5
52
38
2
11
47
1.55
49930--49955
3
8.7
3
100
0
52
34
0
65
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56436--56476
20
2.0
20
100
0
82
36
24
9
29
1.87
57262--57305
21
2.1
21
87
4
63
15
29
13
40
1.86
57432--57462
2
15.5
2
100
0
62
48
0
0
51
1.00
61445--61479
2
18.0
2
94
5
63
48
0
0
51
1.00
61659--61700
2
21.0
2
100
0
84
50
0
0
50
1.00
63892--63941
23
2.2
23
96
0
91
34
6
24
36
1.80
63855--64017
87
1.9
87
94
2
292
38
10
15
34
1.82
67128--67489
200
1.8
198
86
3
514
30
14
14
39
1.87
67232--67724
251
2.0
252
85
4
665
30
15
15
38
1.88
68998--69049
6
8.7
6
91
0
50
17
32
11
38
1.85
70545--71109
179
3.0
179
86
7
711
32
18
13
35
1.90
70725--71109
201
1.9
200
94
1
682
32
17
14
35
1.90
70403--71109
380
1.9
368
89
5
1087
32
17
14
35
1.89
73172--73235
33
1.9
33
93
0
110
23
45
0
31
1.53
73269--73312
21
2.1
21
91
0
70
15
29
13
40
1.86
76648--76699
22
2.3
23
96
3
97
9
15
13
61
1.56
76648--76709
23
2.8
22
87
4
70
12
16
12
58
1.64
92779--92889
39
2.8
40
79
15
133
35
18
0
45
1.56
92930--93001
21
3.5
20
77
15
60
29
1
2
66
1.14
93045--93080
18
2.0
18
88
0
54
52
2
0
44
1.15
101039--101071
17
2.0
17
88
5
50
18
12
9
60
1.57

Tables:   1

The End!