Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006802.1 Hibiscus syriacus cultivar Beakdansim tig00017265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 79231
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Found at i:4343 original size:36 final size:35
Alignment explanation
Indices: 4295--4374 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 35
4285 CAACTTTAAA
*
4295 AAAAATGATTTTT-AAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGATTTTTCAAAATTTGGTAAATG-TT-TTTG
*
4331 AAAAAT-AGTTTTTCAAAATTTGGTAGATGTTTTTG
1 AAAAATGA-TTTTTCAAAATTTGGTAAATGTTTTTG
4366 AAAAATGAT
1 AAAAATGAT
4375 AATGGGATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
35 12 0.31
36 14 0.36
37 13 0.33
ACGTcount: A:0.38, C:0.03, G:0.16, T:0.44
Consensus pattern (35 bp):
AAAAATGATTTTTCAAAATTTGGTAAATGTTTTTG
Found at i:8784 original size:36 final size:37
Alignment explanation
Indices: 8731--8813 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
8721 TGGCAACCAA
*
8731 CTTTGAAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
1 CTTT-AAAAAATAGTTTTTCAAAGTTTGGTAAATGTTT
*
8768 CTTTAAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTAAAAAATAGTTTTTCAAAGTTTGGTAAATGTTT
* *
8805 GTTGAAAAA
1 CTTTAAAAA
8814 TGATAATGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 7 0.17
37 34 0.83
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (37 bp):
CTTTAAAAAATAGTTTTTCAAAGTTTGGTAAATGTTT
Found at i:30141 original size:2 final size:2
Alignment explanation
Indices: 30134--30161 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
30124 TCGTTTCGCA
30134 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30162 TTAAAGGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32809 original size:93 final size:92
Alignment explanation
Indices: 32629--32951 Score: 434
Period size: 93 Copynumber: 3.5 Consensus size: 92
32619 TTTTTCTTTA
** * * * * *
32629 ACCGTTAATTAAACCGAAATTTATTTTAAAATTATTAACCAAACCAAAGTAACCAATTTTTTTTC
1 ACCGTTAATCGAACTGAAATTTATTTAAAAATTATTAACCGAACCAAATTAACGAA--TTTTTTC
32694 TTTAACATTAATCGAACCAAAATTATTTG
64 TTTAACATTAATCGAACCAAAATTATTTG
* * *
32723 ATCGTTAATCGAACTGAAATTTATTTAAAAATTATTAACCGAACAAAATTAATTGAATTTTTTCT
1 ACCGTTAATCGAACTGAAATTTATTTAAAAATTATTAACCGAACCAAATTAA-CGAATTTTTTCT
32788 TTAACATTAATCGAACCAAAATTATTTG
65 TTAACATTAATCGAACCAAAATTATTTG
* * * *
32816 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACTGAACCAAATCAACCG-ATTTTTTCT
1 ACCGTTAATCGAACTGAAATTTATTTAAAAATTATTAACCGAACCAAATTAA-CGAATTTTTTCT
*
32880 TTAACCATTAATCGAACCGAAATTATTTG
65 TTAA-CATTAATCGAACCAAAATTATTTG
*
32909 ACCGTTAATCGAA-TCAAAATTTATTTAAAAATTATTAACCGAA
1 ACCGTTAATCGAACT-GAAATTTATTTAAAAATTATTAACCGAA
32952 TTAACCGAAT
Statistics
Matches: 203, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
92 13 0.06
93 144 0.71
94 44 0.22
95 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.36
Consensus pattern (92 bp):
ACCGTTAATCGAACTGAAATTTATTTAAAAATTATTAACCGAACCAAATTAACGAATTTTTTCTT
TAACATTAATCGAACCAAAATTATTTG
Found at i:33099 original size:170 final size:167
Alignment explanation
Indices: 32816--33125 Score: 469
Period size: 170 Copynumber: 1.8 Consensus size: 167
32806 AAATTATTTG
** * ***
32816 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACTGAACCAAATCAACCGATTTTTTCTT
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATCAACCAAAAATTTCTT
32881 TAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAATCAAAATTTATTTAAAAATTATTA
66 TAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAATCAAAATTTATTTAAAAATTATTA
32946 ACCGAATTAACCGAATAAAATAAACTATTTTTTCCTTA
131 ACCG-ATTAACCGAATAAAATAAACTATTTTTTCCTTA
* * * *
32984 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAATCGATTTAACCAAAAAAATTTC
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATCAACC--AAAAATTTC
*
33049 TTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCG-ATCCAAAATTTATTTGAAAATTA
64 TTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAAT-CAAAATTTATTTAAAAATTA
*
33113 TTTACCGATTAAC
128 TTAACCGATTAAC
33126 GGATAATTTG
Statistics
Matches: 127, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
168 48 0.38
169 8 0.06
170 71 0.56
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.35
Consensus pattern (167 bp):
ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATCAACCAAAAATTTCTT
TAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAATCAAAATTTATTTAAAAATTATTA
ACCGATTAACCGAATAAAATAAACTATTTTTTCCTTA
Found at i:36058 original size:24 final size:24
Alignment explanation
Indices: 36031--36089 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
36021 CAAAAATCAA
* *
36031 AACAGAATCCAGGTCAGATAGTAT
1 AACAGAATCCAGGTCAGATAGCAG
36055 AACAGAATCCAGGTCAGATAGCAG
1 AACAGAATCCAGGTCAGATAGCAG
*
36079 AACATAATCCA
1 AACAGAATCCA
36090 TGTTAGGTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.17
Consensus pattern (24 bp):
AACAGAATCCAGGTCAGATAGCAG
Found at i:38513 original size:23 final size:23
Alignment explanation
Indices: 38486--38545 Score: 86
Period size: 23 Copynumber: 2.6 Consensus size: 23
38476 AAAGTCAACG
*
38486 GTCAAC-AGGTTGACTTGGTCAAA
1 GTCAACGA-GTTGACTCGGTCAAA
*
38509 GTCAACGATTTGACTCGGTCAAA
1 GTCAACGAGTTGACTCGGTCAAA
38532 GTCAACGAGTTGAC
1 GTCAACGAGTTGAC
38546 CTAGTGAGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 32 0.97
24 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (23 bp):
GTCAACGAGTTGACTCGGTCAAA
Found at i:40725 original size:28 final size:28
Alignment explanation
Indices: 40686--40779 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
40676 AGGAATTATG
* **
40686 GTTTCAAGAGAAACCGACTCAAAGATAT
1 GTTTCAAAAGAAACAAACTCAAAGATAT
*
40714 GTTTCAAAAGAAACAAACTCAAAGATTT
1 GTTTCAAAAGAAACAAACTCAAAGATAT
*
40742 GTTT--AAA-AAACAAACTTAAAGATGATGT
1 GTTTCAAAAGAAACAAACTCAAAGAT-A--T
40770 GTTTCAAAAG
1 GTTTCAAAAG
40780 CAACTGTCTC
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
25 15 0.28
26 3 0.06
28 33 0.61
30 3 0.06
ACGTcount: A:0.47, C:0.13, G:0.15, T:0.26
Consensus pattern (28 bp):
GTTTCAAAAGAAACAAACTCAAAGATAT
Found at i:40762 original size:25 final size:27
Alignment explanation
Indices: 40702--40769 Score: 86
Period size: 25 Copynumber: 2.5 Consensus size: 27
40692 AGAGAAACCG
40702 ACTCAAAGATATGTTTCAAAAGAAACAA
1 ACTCAAAGATATGTTT-AAAAGAAACAA
*
40730 ACTCAAAGATTTGTTT-AAA-AAACAA
1 ACTCAAAGATATGTTTAAAAGAAACAA
*
40755 ACTTAAAGATGATGT
1 ACTCAAAGAT-ATGT
40770 GTTTCAAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 15 0.42
26 6 0.17
28 15 0.42
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (27 bp):
ACTCAAAGATATGTTTAAAAGAAACAA
Found at i:42550 original size:29 final size:26
Alignment explanation
Indices: 42517--42576 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
42507 GCTTCTTATC
*
42517 TTCTTACTTTTCGTTTTTCCTTTGTTTGT
1 TTCTTAC-TTT-GTTTTT-CTTTCTTTGT
* *
42546 TTCTTGCTTTGTTTTTTTTTCTTTGT
1 TTCTTACTTTGTTTTTCTTTCTTTGT
42572 TTCTT
1 TTCTT
42577 TTCTCATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 13 0.46
27 6 0.21
28 3 0.11
29 6 0.21
ACGTcount: A:0.02, C:0.15, G:0.10, T:0.73
Consensus pattern (26 bp):
TTCTTACTTTGTTTTTCTTTCTTTGT
Found at i:42593 original size:14 final size:14
Alignment explanation
Indices: 42554--42594 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
42544 GTTTCTTGCT
* *
42554 TTGTTTTTTTTTCT
1 TTGTTTTTTTCTCA
42568 TTGTTTCTTTTCTCA
1 TTGTTT-TTTTCTCA
42583 TTGTTTTTTTCT
1 TTGTTTTTTTCT
42595 TTGATGTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.02, C:0.12, G:0.07, T:0.78
Consensus pattern (14 bp):
TTGTTTTTTTCTCA
Found at i:44589 original size:32 final size:32
Alignment explanation
Indices: 44546--44626 Score: 153
Period size: 32 Copynumber: 2.5 Consensus size: 32
44536 GTCATGATAT
*
44546 CTACCCGAACATGCTTTAATTAGATAGTAATC
1 CTACCCAAACATGCTTTAATTAGATAGTAATC
44578 CTACCCAAACATGCTTTAATTAGATAGTAATC
1 CTACCCAAACATGCTTTAATTAGATAGTAATC
44610 CTACCCAAACATGCTTT
1 CTACCCAAACATGCTTT
44627 CTACCCAAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.31
Consensus pattern (32 bp):
CTACCCAAACATGCTTTAATTAGATAGTAATC
Found at i:50226 original size:33 final size:33
Alignment explanation
Indices: 50176--50303 Score: 159
Period size: 33 Copynumber: 3.9 Consensus size: 33
50166 AGGGAAGCAT
* * *
50176 CATCATTCGAGGCAGTAGGTCCAGGAAAAACAT
1 CATCATTCGAGTCAGTAGGTCCAGGAGAAACAC
* *
50209 CATCATGCGAGTTAGTAGGTCCAGGAGAAACAC
1 CATCATTCGAGTCAGTAGGTCCAGGAGAAACAC
* * *
50242 CTTCATTCAAGTCAGTAGGTCCAAGG-GAATCAC
1 CATCATTCGAGTCAGTAGGTCC-AGGAGAAACAC
*
50275 CATCATTCGAGTCAGTAGGTCCAAGAGAA
1 CATCATTCGAGTCAGTAGGTCCAGGAGAA
50304 TCCTGTTCAA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
32 2 0.03
33 75 0.94
34 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (33 bp):
CATCATTCGAGTCAGTAGGTCCAGGAGAAACAC
Found at i:51773 original size:153 final size:153
Alignment explanation
Indices: 51495--51806 Score: 561
Period size: 153 Copynumber: 2.0 Consensus size: 153
51485 TTAAAACAAG
* * *
51495 ATCAGATGAAAACCGAATTGTTCCTGCAAAGCTAACTGGAATGATGGATCCATTAGGTATGGTGA
1 ATCAGATGAAAACCGAACTGTGCCTGCAAAGCTAACTGGAATGATGGATCCATTAGGTAAGGTGA
51560 CTGAACAACTTGTTATGGGAAATAATGATTCAAAGAGAGTCCTTGAATAACATATATGTCTTGAA
66 CTGAACAACTTGTTATGGGAAATAATGATTCAAAGAGAGTCCTTGAATAACATATATGTCTTGAA
*
51625 GCCCCATAATCTAAAATCCAGTA
131 ACCCCATAATCTAAAATCCAGTA
51648 ATCAGATGAAAACCGAACTGTGCCTGCAAAGCTAACTGGAATGATGGATCCATTAGGTAAGGTGA
1 ATCAGATGAAAACCGAACTGTGCCTGCAAAGCTAACTGGAATGATGGATCCATTAGGTAAGGTGA
* * *
51713 CTGAACAACTTGTTATGGGAAATAGTTATTCAAATAGAGTCCTTGAATAACATATATGTCTTGAA
66 CTGAACAACTTGTTATGGGAAATAATGATTCAAAGAGAGTCCTTGAATAACATATATGTCTTGAA
51778 ACCCCATAATCTAAAATCCAGTA
131 ACCCCATAATCTAAAATCCAGTA
51801 ATCAGA
1 ATCAGA
51807 CATTCCAACA
Statistics
Matches: 152, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
153 152 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (153 bp):
ATCAGATGAAAACCGAACTGTGCCTGCAAAGCTAACTGGAATGATGGATCCATTAGGTAAGGTGA
CTGAACAACTTGTTATGGGAAATAATGATTCAAAGAGAGTCCTTGAATAACATATATGTCTTGAA
ACCCCATAATCTAAAATCCAGTA
Found at i:60301 original size:13 final size:13
Alignment explanation
Indices: 60281--60316 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
60271 ATAAAATTTT
60281 ATTAAATTAA-TA
1 ATTAAATTAATTA
60293 ATGTAAATTAATTA
1 AT-TAAATTAATTA
60307 ATTAAATTAA
1 ATTAAATTAA
60317 AAATTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.09
13 16 0.73
14 4 0.18
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (13 bp):
ATTAAATTAATTA
Found at i:64196 original size:30 final size:30
Alignment explanation
Indices: 64157--64213 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
64147 ATTTTATATT
* *
64157 AAGGGGTGAACTTGAATTTATAGAATTTTA
1 AAGGAGTGAACTTGAATTTATAAAATTTTA
64187 AAGGAGTGAACTTGAATTTATAAAATT
1 AAGGAGTGAACTTGAATTTATAAAATT
64214 CTAGGGATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (30 bp):
AAGGAGTGAACTTGAATTTATAAAATTTTA
Found at i:65801 original size:38 final size:38
Alignment explanation
Indices: 65706--65803 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 38
65696 CATTTTCGTC
65706 CTACTAAGATTCAAACTCCT-AAAAATAAGATAGAATT
1 CTACTAAGATTCAAACTCCTAAAAAATAAGATAGAATT
* * * * * *
65743 TTGCTAGGATTCAAATTCCTAAAAAATATGATAGAGTT
1 CTACTAAGATTCAAACTCCTAAAAAATAAGATAGAATT
* *
65781 CTACTATGATTTAAACTCCTAAA
1 CTACTAAGATTCAAACTCCTAAA
65804 GATAGGATCC
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
37 16 0.33
38 33 0.67
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (38 bp):
CTACTAAGATTCAAACTCCTAAAAAATAAGATAGAATT
Found at i:66308 original size:21 final size:21
Alignment explanation
Indices: 66284--66377 Score: 66
Period size: 21 Copynumber: 4.3 Consensus size: 21
66274 TTTTTACACT
66284 ATATATTATTATTATATATAC
1 ATATATTATTATTATATATAC
* *
66305 ATATATTTTTATTTATTATATTC
1 ATATATTATTA-TTA-TATATAC
* *
66328 ATTTGATTATT-TTTTA-ATAC
1 ATAT-ATTATTATTATATATAC
* *
66348 TATATTTATTATTTTTATATATAT
1 -ATA--TATTATTATTATATATAC
66372 ATATAT
1 ATATAT
66378 ACTCTTTTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
20 3 0.05
21 17 0.30
22 11 0.20
23 17 0.30
24 8 0.14
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (21 bp):
ATATATTATTATTATATATAC
Found at i:66394 original size:23 final size:23
Alignment explanation
Indices: 66337--66394 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 23
66327 CATTTGATTA
* *
66337 TTTTTT-AATACTATATTTATTAT
1 TTTTTTAAATA-TATATATACTAT
* * *
66360 TTTTATATATATATATATACTCT
1 TTTTTTAAATATATATATACTAT
66383 TTTTTTAAATAT
1 TTTTTTAAATAT
66395 TTTACTTATA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 24 0.89
24 3 0.11
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTTTTAAATATATATATACTAT
Found at i:66590 original size:32 final size:29
Alignment explanation
Indices: 66511--66590 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 29
66501 TATAAGCCAA
66511 TTATCATTATATGTATATTTTATATTTGGTTT
1 TTAT-ATTATAT-TATA-TTTATATTTGGTTT
* *
66543 ATATATT-TATT-TATTTATTTTTGGTTT
1 TTATATTATATTATATTTATATTTGGTTT
66570 TT-T-TTATATTATA-TTATATTT
1 TTATATTATATTATATTTATATTT
66591 TCATATTACT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
25 2 0.05
26 12 0.29
27 16 0.38
28 2 0.05
29 1 0.02
30 3 0.07
31 3 0.07
32 3 0.07
ACGTcount: A:0.25, C:0.01, G:0.06, T:0.68
Consensus pattern (29 bp):
TTATATTATATTATATTTATATTTGGTTT
Found at i:66591 original size:18 final size:19
Alignment explanation
Indices: 66570--66620 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
66560 TTTTTGGTTT
66570 TTTTTATATTATATTA-TA
1 TTTTTATATTATATTATTA
*
66588 TTTTCATATTACTATTATTA
1 TTTTTATATTA-TATTATTA
*
66608 TTGTTATGATTAT
1 TTTTTAT-ATTAT
66621 TTTTCTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 10 0.37
19 5 0.19
20 8 0.30
21 4 0.15
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTTATATTATATTATTA
Found at i:66670 original size:4 final size:4
Alignment explanation
Indices: 66657--66698 Score: 57
Period size: 4 Copynumber: 10.2 Consensus size: 4
66647 TATATATATA
* *
66657 TATT TCATT TATT TATT TATT TATT TATT TTTT TTTT TATT T
1 TATT T-ATT TATT TATT TATT TATT TATT TATT TATT TATT T
66699 TTTTTACTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 31 0.89
5 4 0.11
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (4 bp):
TATT
Found at i:66699 original size:8 final size:8
Alignment explanation
Indices: 66663--66744 Score: 60
Period size: 8 Copynumber: 10.0 Consensus size: 8
66653 TATATATTTC
*
66663 ATTTATTT
1 ATTTTTTT
*
66671 ATTTATTT
1 ATTTTTTT
66679 ATTTATTTT
1 ATTT-TTTT
66688 -TTTTTTT
1 ATTTTTTT
66695 ATTTTTTTT
1 A-TTTTTTT
*
66704 ACTTATTTT
1 A-TTTTTTT
* *
66713 A-TTCTTC
1 ATTTTTTT
66720 ATTTTTTT
1 ATTTTTTT
*
66728 CATTTTTTC
1 -ATTTTTTT
66737 ATTTTTTT
1 ATTTTTTT
66745 CCTCTAACAC
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
7 8 0.14
8 26 0.44
9 25 0.42
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (8 bp):
ATTTTTTT
Found at i:66699 original size:12 final size:12
Alignment explanation
Indices: 66668--66727 Score: 57
Period size: 12 Copynumber: 4.9 Consensus size: 12
66658 ATTTCATTTA
* *
66668 TTTATTTATTTA
1 TTTATTTTTTTT
66680 TTTATTTTTTTT
1 TTTATTTTTTTT
66692 TTTATTTTTTTT
1 TTTATTTTTTTT
* * *
66704 ACTTATTTTATTC
1 -TTTATTTTTTTT
*
66717 TTCATTTTTTT
1 TTTATTTTTTT
66728 CATTTTTTCA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
12 30 0.77
13 9 0.23
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTATTTTTTTT
Found at i:66745 original size:9 final size:9
Alignment explanation
Indices: 66717--66745 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
66707 TATTTTATTC
66717 TTCATTTTT
1 TTCATTTTT
66726 TTCA-TTTT
1 TTCATTTTT
66734 TTCATTTTT
1 TTCATTTTT
66743 TTC
1 TTC
66746 CTCTAACACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (9 bp):
TTCATTTTT
Found at i:71103 original size:9 final size:9
Alignment explanation
Indices: 71081--71136 Score: 52
Period size: 9 Copynumber: 6.9 Consensus size: 9
71071 CAATCAAAAA
71081 CAAAA-AAG
1 CAAAAGAAG
71089 -AAAAGAAG
1 CAAAAGAAG
71097 CAAAAGAAG
1 CAAAAGAAG
71106 -AAAA-AA-
1 CAAAAGAAG
*
71112 -AAAAGAAA
1 CAAAAGAAG
*
71120 CAAAAGAAA
1 CAAAAGAAG
71129 CAAAAGAA
1 CAAAAGAA
71137 AAAGAAAGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
6 4 0.09
7 8 0.19
8 7 0.16
9 24 0.56
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (9 bp):
CAAAAGAAG
Found at i:71115 original size:23 final size:22
Alignment explanation
Indices: 71082--71143 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 22
71072 AATCAAAAAC
* *
71082 AAAAAAGAAAAGAAGCAAAAGA
1 AAAAAAAAAAAGAAACAAAAGA
71104 AGAAAAAAAAAAGAAACAAAAGA
1 A-AAAAAAAAAAGAAACAAAAGA
71127 AACAAAAGAAAAAGAAA
1 AA-AAAA-AAAAAGAAA
71144 GAACAAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 2 0.06
23 24 0.69
24 9 0.26
ACGTcount: A:0.81, C:0.05, G:0.15, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAAGAAACAAAAGA
Found at i:71125 original size:32 final size:31
Alignment explanation
Indices: 71076--71163 Score: 88
Period size: 32 Copynumber: 2.7 Consensus size: 31
71066 AGATCCAATC
* * *
71076 AAAAACAAAAAAGAAAAGAAGCAAAAGAAGA
1 AAAAAAAAAAAACAAAAGAAACAAAAGAAGA
71107 AAAAAAAAAGAAACAAAAGAAACAAAAGAA-A
1 AAAAAAAAA-AAACAAAAGAAACAAAAGAAGA
71138 AAGAAAGAACAAAAATCAAAAAGAAA
1 AA-AAA-AA-AAAAA-C-AAAAGAAA
71164 AGGGACAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
31 11 0.23
32 21 0.44
33 5 0.10
34 3 0.06
35 8 0.17
ACGTcount: A:0.80, C:0.07, G:0.12, T:0.01
Consensus pattern (31 bp):
AAAAAAAAAAAACAAAAGAAACAAAAGAAGA
Found at i:71135 original size:18 final size:18
Alignment explanation
Indices: 71083--71151 Score: 58
Period size: 18 Copynumber: 3.9 Consensus size: 18
71073 ATCAAAAACA
71083 AAAAAGAAAAGAAGCAAAAG
1 AAAAAG-AAAGAA-CAAAAG
*
71103 ---AAGAAA-AAAAAAAG
1 AAAAAGAAAGAACAAAAG
*
71117 AAACA-AAAGAAACAAAAG
1 AAAAAGAAAG-AACAAAAG
71135 AAAAAGAAAGAACAAAA
1 AAAAAGAAAGAACAAAA
71152 ATCAAAAAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
14 5 0.13
15 2 0.05
16 6 0.15
17 4 0.10
18 18 0.46
19 4 0.10
ACGTcount: A:0.80, C:0.06, G:0.14, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAGAACAAAAG
Found at i:71137 original size:9 final size:9
Alignment explanation
Indices: 71112--71151 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
71102 GAAGAAAAAA
71112 AAAAGAAAC
1 AAAAGAAAC
71121 AAAAGAAAC
1 AAAAGAAAC
*
71130 AAAAGAAAA
1 AAAAGAAAC
71139 AGAAAG-AAC
1 A-AAAGAAAC
71148 AAAA
1 AAAA
71152 ATCAAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 3 0.11
9 21 0.75
10 4 0.14
ACGTcount: A:0.80, C:0.07, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAGAAAC
Found at i:71138 original size:28 final size:29
Alignment explanation
Indices: 71077--71151 Score: 77
Period size: 28 Copynumber: 2.7 Consensus size: 29
71067 GATCCAATCA
* *
71077 AAAACAAAAAAGAAA-AGAAGCAAAAGAAG
1 AAAA-AAAAAAGAAACAAAAGCAAAAAAAG
71106 AAAAAAAAAAGAAACAAAAG-AAACAAAAG
1 AAAAAAAAAAGAAACAAAAGCAAA-AAAAG
*
71135 -AAAAAGAAAG-AACAAAA
1 AAAAAAAAAAGAAACAAAA
71152 ATCAAAAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 7 0.17
28 22 0.54
29 12 0.29
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (29 bp):
AAAAAAAAAAGAAACAAAAGCAAAAAAAG
Found at i:71835 original size:22 final size:22
Alignment explanation
Indices: 71773--71837 Score: 121
Period size: 22 Copynumber: 3.0 Consensus size: 22
71763 AACCGTTAAT
*
71773 CATCAAATGCCAAACCTATGAG
1 CATCAAATGCCAAACCTTTGAG
71795 CATCAAATGCCAAACCTTTGAG
1 CATCAAATGCCAAACCTTTGAG
71817 CATCAAATGCCAAACCTTTGA
1 CATCAAATGCCAAACCTTTGA
71838 CCAAACATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.38, C:0.28, G:0.12, T:0.22
Consensus pattern (22 bp):
CATCAAATGCCAAACCTTTGAG
Found at i:72270 original size:18 final size:19
Alignment explanation
Indices: 72247--72283 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
72237 TCAACATCAA
72247 ATATTGGGGCATT-TTTGG
1 ATATTGGGGCATTATTTGG
72265 ATATTGGGGCATTATTTGG
1 ATATTGGGGCATTATTTGG
72284 GGATTCAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.43
Consensus pattern (19 bp):
ATATTGGGGCATTATTTGG
Found at i:72868 original size:106 final size:106
Alignment explanation
Indices: 72651--74127 Score: 2186
Period size: 106 Copynumber: 14.0 Consensus size: 106
72641 ATATCGTGCC
* * * * * * * *
72651 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGTTGGTTGTCAAC-AATAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * *
72715 AATTTCGGAGCCAATTTTAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
72756 ATTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
72821 AATTTCAGATCCAATTTCAACTTCACATCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
72862 ACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
72927 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGAT-TTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
72967 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGTTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
73032 AATTTTAGAGCCAATTTCAACTTCACAACGAATGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
73073 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
73138 AATTTCAGAGCCAATTTCAACTTCAC-ACGAAGG--ATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
73176 ACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
73241 AATTTCAGAGCCAATTTCAACTTCACCATGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
73282 ACTCCAGACAACGCAAGTTCAACTTTACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
**
73347 AATTTCAGAGCCAATTTCAACTTCACAATTAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
73388 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
73453 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
73494 ACTCAAGACATCGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
73559 AATTTCAGAGCCAATTTCAACTTCACAGCGAATGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
73600 ACTCCAGACAACGCAGGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
73665 AATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
73706 ACTCCAGACAACGCAAGTTCAGCTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
** *
73771 AATTTCAGAGCCAATTTCAACTTCACAGTGTAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
73812 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTAGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * *
73877 AATTTCAGAGCCAATTTCAACTTCTCAGCGAAGGATCTTGA
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * * * *
73918 AC-CCAAGGCAACACAAGCTCAACTTCACGACGAAGGGGCGGCTGATTGTCAAC-AA-AA-TT-T
1 ACTCC-AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* *
73978 C-A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * *
74018 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * *
74083 AGTTCCAGAGCCAATTTCAACTTCACGACGGAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
74124 ACTC
1 ACTC
74128 AGAACAATGC
Statistics
Matches: 1250, Mismatches: 109, Indels: 25
0.90 0.08 0.02
Matches are distributed among these distances:
100 79 0.06
101 4 0.00
102 3 0.00
103 96 0.08
104 9 0.01
105 153 0.12
106 906 0.72
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:74886 original size:37 final size:37
Alignment explanation
Indices: 74833--74937 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
74823 CTTTTTCGTC
*
74833 CTACTAGGATTCAAACTCCTAAAAATATGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
74870 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
74907 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
74938 CCACAAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:75675 original size:28 final size:25
Alignment explanation
Indices: 75642--75703 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 25
75632 ATATGTAAAC
75642 TTTTATATTGGTTTATAT-ATTTATTTAT
1 TTTTATATT-GTTT-T-TGATTT-TTTAT
75670 TTTTAT-TTGTTTTTGATTTTTTAT
1 TTTTATATTGTTTTTGATTTTTTAT
75694 TTATTATATT
1 TT-TTATATT
75704 ATATTTTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
24 8 0.26
25 9 0.29
26 6 0.19
27 2 0.06
28 6 0.19
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (25 bp):
TTTTATATTGTTTTTGATTTTTTAT
Found at i:75765 original size:2 final size:2
Alignment explanation
Indices: 75758--75809 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
75748 TTTACTCATT
75758 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75799 TA TA TA TA TA T
1 TA TA TA TA TA T
75810 CATTATTTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75866 original size:16 final size:17
Alignment explanation
Indices: 75819--75869 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
75809 TCATTATTTA
* *
75819 TTTATTTTCTTTTTATT
1 TTTATTTTATTTTTATC
*
75836 TTTTTTACTTATTTTTATC
1 TTTATT--TTATTTTTATC
75855 TTTATTTT-TTTTTAT
1 TTTATTTTATTTTTAT
75870 TTATTCATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
16 7 0.25
17 7 0.25
19 14 0.50
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTATTTTATTTTTATC
Found at i:75868 original size:10 final size:10
Alignment explanation
Indices: 75819--75871 Score: 52
Period size: 12 Copynumber: 4.7 Consensus size: 10
75809 TCATTATTTA
75819 TTTATTTTCTT
1 TTTATTTT-TT
75830 TTTATTTTTTT
1 TTTA-TTTTTT
75841 TACTTATTTTTAT
1 T--TTATTTTT-T
75854 CTTTATTTTTT
1 -TTTATTTTTT
75865 TTTATTT
1 TTTATTT
75872 ATTCATTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
10 7 0.19
11 8 0.22
12 17 0.46
13 4 0.11
14 1 0.03
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:75880 original size:30 final size:30
Alignment explanation
Indices: 75819--75881 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
75809 TCATTATTTA
* *
75819 TTTATTTTCTTTTTATTTTTTTTACTTATT
1 TTTATTTTATTTTTATTTTATTTACTTATT
75849 TTTATCTTTATTTTT-TTTTATTTA-TTCATT
1 TTTAT-TTTATTTTTATTTTATTTACTT-ATT
75879 TTT
1 TTT
75882 CCCTCTAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 2 0.07
30 19 0.66
31 8 0.28
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.79
Consensus pattern (30 bp):
TTTATTTTATTTTTATTTTATTTACTTATT
Found at i:78089 original size:16 final size:16
Alignment explanation
Indices: 78068--78101 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
78058 ATGAGCATCT
*
78068 AGCTTAACGAGTAACA
1 AGCTTAACAAGTAACA
78084 AGCTTAACAAGTAACA
1 AGCTTAACAAGTAACA
78100 AG
1 AG
78102 TCGAGCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (16 bp):
AGCTTAACAAGTAACA
Found at i:78169 original size:30 final size:32
Alignment explanation
Indices: 78100--78170 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 32
78090 ACAAGTAACA
*
78100 AGTCGAGCAACAAATTTTTTTAACGAGCAACG
1 AGTCGAGCAACAAAATTTTTTAACGAGCAACG
* *
78132 TGTCGAGCAACAAAATTTTTTAACGAG-TAC-
1 AGTCGAGCAACAAAATTTTTTAACGAGCAACG
78162 AGTCGAGCA
1 AGTCGAGCA
78171 CTGCCTTACT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 8 0.23
31 2 0.06
32 25 0.71
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (32 bp):
AGTCGAGCAACAAAATTTTTTAACGAGCAACG
Done.