genome.fa.s6804.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006804.1 Hibiscus syriacus cultivar Beakdansim tig00017269_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104202

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3209--3749	246	2.2	251	89	4	830	24	11	21	42	1.86
9966--10039	29	2.6	28	78	14	71	63	5	1	29	1.25
15461--15540	41	2.0	41	94	0	142	53	2	8	35	1.45
16582--16644	17	3.4	17	69	23	54	28	19	3	49	1.63
16586--16655	21	3.4	21	70	21	76	28	18	4	48	1.67
16580--16659	40	2.0	40	100	0	160	30	17	5	47	1.69
17979--18016	20	1.9	20	94	0	67	28	18	18	34	1.95
17980--18024	20	2.2	20	88	0	63	33	15	20	31	1.93
19538--19592	9	6.0	9	72	19	51	47	0	0	52	1.00
19897--19950	17	3.2	17	75	15	67	38	12	27	20	1.89
20139--20225	31	2.8	31	78	1	84	48	8	14	28	1.73
27988--28049	30	2.1	30	90	0	97	24	16	19	40	1.91
28000--28069	30	2.3	30	90	0	104	22	14	20	42	1.88
38816--38899	32	2.5	33	84	5	107	40	30	10	17	1.84
47337--47400	3	21.0	3	78	9	67	35	1	0	62	1.05
50761--50855	27	3.6	27	97	2	176	30	12	15	41	1.85
55436--55982	273	2.0	273	97	2	1046	33	18	19	28	1.95
57212--57242	10	3.1	10	90	0	53	25	12	0	61	1.32
59088--59554	180	2.6	180	87	2	641	44	14	15	25	1.84
61724--61788	21	3.1	21	90	0	103	41	10	29	18	1.84
61822--61887	33	2.0	33	87	0	96	27	0	50	22	1.50
62792--62840	19	2.6	19	96	0	89	32	2	10	55	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63096--64251	200	5.8	200	95	0	1960	35	14	18	31	1.91
67760--67926	87	1.9	86	90	3	264	34	12	9	43	1.75
68332--68431	48	2.2	46	89	8	150	46	17	11	26	1.81
79870--79903	16	2.1	17	88	5	52	35	0	0	64	0.94
80323--80351	12	2.3	13	94	5	51	75	3	0	20	0.94
80326--80372	21	2.2	22	81	11	62	70	8	0	21	1.14
84804--84856	26	2.0	26	100	0	106	37	15	16	30	1.90
95357--95421	33	2.0	33	93	0	112	46	9	20	24	1.79

Tables:   1

The End!