genome.fa.s6805.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006805.1 Hibiscus syriacus cultivar Beakdansim tig00017273_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95316

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--73	23	2.9	24	83	10	88	31	20	24	23	1.98
5975--6037	23	2.7	23	95	0	117	33	22	23	20	1.97
6040--6121	24	3.5	24	83	1	103	29	20	26	23	1.99
5975--6116	23	6.1	23	82	4	115	31	21	25	21	1.98
6216--6252	16	2.4	16	83	16	51	51	18	2	27	1.60
8233--8273	2	20.5	2	100	0	82	51	0	0	48	1.00
8554--8699	75	1.9	75	88	0	220	39	11	23	25	1.88
9247--9319	32	2.3	32	83	11	96	43	13	10	31	1.79
10275--10427	29	5.3	29	68	9	78	35	23	4	36	1.76
10640--10666	2	13.5	2	100	0	54	48	0	0	51	1.00
22541--22580	21	1.9	21	85	10	55	22	12	7	57	1.60
24792--24825	15	2.3	15	90	5	52	38	11	2	47	1.55
29038--29098	25	2.4	25	84	10	88	34	13	21	31	1.91
31397--31449	2	26.5	2	100	0	106	49	0	0	50	1.00
31982--32038	28	2.1	27	83	9	71	54	8	8	28	1.61
32863--32900	16	2.5	15	83	8	51	26	0	13	60	1.33
32977--33009	16	2.1	16	100	0	66	57	24	12	6	1.57
33075--33149	10	7.7	10	69	21	61	57	21	12	9	1.62
33079--33143	16	4.1	16	95	0	121	56	23	12	7	1.61
33896--33951	14	4.3	14	76	17	57	55	23	10	10	1.65
33876--33950	24	3.1	24	84	3	89	57	20	9	13	1.63
36455--36510	20	2.8	20	94	0	94	25	28	10	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39063--39109	18	2.7	18	83	3	60	27	27	8	36	1.86
42050--42097	15	3.2	15	81	0	51	29	4	39	27	1.75
42540--42617	28	2.8	28	96	0	138	41	10	16	32	1.82
44898--45183	5	57.0	5	95	4	515	40	0	0	59	0.97
48837--48888	27	1.9	27	96	0	95	36	11	30	21	1.89
49333--49424	37	2.4	36	80	14	103	45	3	8	42	1.51
53532--53828	99	2.9	104	85	6	435	31	17	18	32	1.94
55207--55761	186	3.0	186	88	1	823	37	21	16	25	1.93
56524--56778	36	6.8	34	78	14	132	43	2	9	43	1.50
56556--56778	36	5.8	38	82	10	156	42	2	9	45	1.48
56594--56778	36	4.9	36	88	7	253	41	1	9	47	1.46
56709--56828	61	2.0	60	90	4	188	43	1	8	46	1.43
56747--56806	25	2.5	25	91	5	97	43	1	8	46	1.43
56747--56846	25	4.2	24	68	20	66	42	1	7	50	1.36
67787--67824	16	2.3	17	90	4	60	71	0	0	28	0.87
70067--70115	23	2.1	23	84	0	62	46	2	0	51	1.12
70073--70132	11	5.3	11	73	13	50	48	1	1	48	1.21
70139--70231	27	3.5	25	75	17	89	45	2	1	51	1.20
70136--70271	54	2.6	53	77	11	129	50	2	0	47	1.19
70298--70351	8	6.9	8	77	10	58	51	0	0	48	1.00
70281--70354	22	3.1	23	84	11	87	52	0	0	47	1.00
70280--70360	30	2.7	30	88	9	114	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78587--78622	18	2.0	18	88	0	54	22	13	30	33	1.93
79894--80028	41	3.3	41	76	5	146	28	2	24	43	1.69
79955--80039	28	3.1	27	75	11	91	29	2	23	44	1.66
79927--80028	14	7.4	14	66	10	57	29	1	24	44	1.65
81329--81434	30	3.6	30	70	11	83	14	7	16	61	1.55
83646--83794	77	1.9	78	80	5	176	44	6	10	37	1.66
84350--84535	2	96.5	2	73	16	72	50	4	1	43	1.31
84449--84516	26	2.7	26	90	2	111	48	7	1	42	1.40
94088--94138	20	2.5	20	96	0	93	39	23	13	23	1.91

Tables:   1

The End!