Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006806.1 Hibiscus syriacus cultivar Beakdansim tig00017274_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50420
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:962 original size:17 final size:17
Alignment explanation
Indices: 940--974 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
930 TTTTTCTATG
940 TTTTATAATAAAATTTA
1 TTTTATAATAAAATTTA
* *
957 TTTTATATTAATATTTA
1 TTTTATAATAAAATTTA
974 T
1 T
975 ATTTTATTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTATAATAAAATTTA
Found at i:2517 original size:20 final size:18
Alignment explanation
Indices: 2474--2517 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
2464 TATCATAAAG
*
2474 ACTTGATGGACTAATCAG
1 ACTTGATGGACTAATCAA
*
2492 ACTTGATGGACTCAAATTAA
1 ACTTGATGGACT--AATCAA
2512 ACTTGA
1 ACTTGA
2518 AATCAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 12 0.55
20 10 0.45
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (18 bp):
ACTTGATGGACTAATCAA
Found at i:3359 original size:25 final size:23
Alignment explanation
Indices: 3321--3394 Score: 67
Period size: 26 Copynumber: 2.9 Consensus size: 23
3311 TTAGTTGATT
3321 TAAAAAACCTTTAAAAATTTAAAAA
1 TAAAAAA--TTTAAAAATTTAAAAA
*
3346 GTAAAAAATGTTAAAAATTCCTAAAGA
1 -TAAAAAAT-TTAAAAATT--TAAAAA
*
3373 TAAAAAATATAAAATATTTAAA
1 TAAAAAATTTAAAA-ATTTAAA
3395 TTTTAAATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
24 5 0.12
25 14 0.33
26 18 0.43
27 5 0.12
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.28
Consensus pattern (23 bp):
TAAAAAATTTAAAAATTTAAAAA
Found at i:7288 original size:75 final size:80
Alignment explanation
Indices: 7132--7291 Score: 240
Period size: 80 Copynumber: 2.0 Consensus size: 80
7122 ACACCTCTGC
7132 TATTGAACTAAATTGAGAGATGTATGTTGTATTTTCTACCATAAGATAAGTCTAGATCAAACTAT
1 TATTGAACTAAATT-AGAGATGTATGTTGTATTTTCTACCATAAGATAAG--TAGATCAAACTAT
7197 ATTATGGCATCCTTCGAT
63 ATTATGGCATCCTTCGAT
* *
7215 TATTGAAC-AAATT-GAGATGTATGTTGTATTTTCTACCATAAGCTTAG-A-AT-AAACTATATT
1 TATTGAACTAAATTAGAGATGTATGTTGTATTTTCTACCATAAGATAAGTAGATCAAACTATATT
7275 ATGGCATCCTTCGAT
66 ATGGCATCCTTCGAT
7290 TA
1 TA
7292 AGGGAGAACA
Statistics
Matches: 75, Mismatches: 2, Indels: 8
0.88 0.02 0.09
Matches are distributed among these distances:
75 27 0.36
76 2 0.03
77 1 0.01
80 32 0.43
82 5 0.07
83 8 0.11
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (80 bp):
TATTGAACTAAATTAGAGATGTATGTTGTATTTTCTACCATAAGATAAGTAGATCAAACTATATT
ATGGCATCCTTCGAT
Found at i:16609 original size:29 final size:29
Alignment explanation
Indices: 16575--16666 Score: 104
Period size: 29 Copynumber: 3.2 Consensus size: 29
16565 CACTAATTTC
16575 ACATGCCATAGAAACTCTCCCTAATTGAT
1 ACATGCCATAGAAACTCTCCCTAATTGAT
* *
16604 ACATGCC-TTGCATAA-TCT-CCAAATT--T
1 ACATGCCATAG-A-AACTCTCCCTAATTGAT
16630 CACATGCCATAGAAACTCTCCCTAATTGAT
1 -ACATGCCATAGAAACTCTCCCTAATTGAT
16660 ACATGCC
1 ACATGCC
16667 TTGCATAAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
26 3 0.06
27 11 0.22
28 16 0.31
29 18 0.35
30 3 0.06
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.28
Consensus pattern (29 bp):
ACATGCCATAGAAACTCTCCCTAATTGAT
Found at i:16649 original size:27 final size:27
Alignment explanation
Indices: 16569--16650 Score: 80
Period size: 28 Copynumber: 3.0 Consensus size: 27
16559 ATGAGTCACT
*
16569 AATTTCACATGCCATAGAAACTCTCCCT
1 AATTTCACATGCCATAGAAACTCT-CCA
*
16597 AATTGAT-ACATGCC-TTGCATAA-TCTCCA
1 AATT--TCACATGCCATAG-A-AACTCTCCA
16625 AATTTCACATGCCATAGAAACTCTCC
1 AATTTCACATGCCATAGAAACTCTCC
16651 CTAATTGATA
Statistics
Matches: 44, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
26 3 0.07
27 13 0.30
28 14 0.32
29 11 0.25
30 3 0.07
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTTCACATGCCATAGAAACTCTCCA
Found at i:16655 original size:56 final size:56
Alignment explanation
Indices: 16569--16674 Score: 212
Period size: 56 Copynumber: 1.9 Consensus size: 56
16559 ATGAGTCACT
16569 AATTTCACATGCCATAGAAACTCTCCCTAATTGATACATGCCTTGCATAATCTCCA
1 AATTTCACATGCCATAGAAACTCTCCCTAATTGATACATGCCTTGCATAATCTCCA
16625 AATTTCACATGCCATAGAAACTCTCCCTAATTGATACATGCCTTGCATAA
1 AATTTCACATGCCATAGAAACTCTCCCTAATTGATACATGCCTTGCATAA
16675 GAGCGCTGCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.33, C:0.27, G:0.09, T:0.30
Consensus pattern (56 bp):
AATTTCACATGCCATAGAAACTCTCCCTAATTGATACATGCCTTGCATAATCTCCA
Found at i:18563 original size:11 final size:11
Alignment explanation
Indices: 18528--18579 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
18518 GTTCACGAAC
18528 ATGTTCGTTTA
1 ATGTTCGTTTA
* * *
18539 GTGTACATTTTA
1 ATGTTC-GTTTA
18551 ATGTTCGTTTA
1 ATGTTCGTTTA
*
18562 ATGTTCCTTTA
1 ATGTTCGTTTA
18573 TATGTTC
1 -ATGTTC
18580 AATTTTTAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
11 18 0.56
12 14 0.44
ACGTcount: A:0.19, C:0.12, G:0.15, T:0.54
Consensus pattern (11 bp):
ATGTTCGTTTA
Found at i:36313 original size:2 final size:2
Alignment explanation
Indices: 36306--36383 Score: 147
Period size: 2 Copynumber: 39.0 Consensus size: 2
36296 ACTCATATGT
36306 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
36348 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36384 CATCTTGCAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 74 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36447 original size:39 final size:38
Alignment explanation
Indices: 36394--36471 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 38
36384 CATCTTGCAT
36394 TTTATCCTATTATTT-CTTTACTTTTTAT-TATTATTATA
1 TTTATCCTATTATTTACTTT-CTTTTT-TCTATTATTATA
* *
36432 TTTATCTTCATTATTTAGTTTCTTTTTTCTATTATTATA
1 TTTATCCT-ATTATTTACTTTCTTTTTTCTATTATTATA
36471 T
1 T
36472 ACATATTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
38 8 0.23
39 24 0.69
40 3 0.09
ACGTcount: A:0.22, C:0.10, G:0.01, T:0.67
Consensus pattern (38 bp):
TTTATCCTATTATTTACTTTCTTTTTTCTATTATTATA
Found at i:36551 original size:138 final size:136
Alignment explanation
Indices: 36455--36726 Score: 402
Period size: 138 Copynumber: 2.0 Consensus size: 136
36445 TTTAGTTTCT
36455 TTTTTCTATTATTA-TATACATATTTTTTTCCTCCCTCTCATATTTAGCTATTATATATATATGG
1 TTTTTCTATTATTATTATACATATTTTTTTCCTCCCTCTCATATTTAGCTATTATATATATATGG
* *
36519 TGTTAATATTATTATATGTTTTTACTAACTTTATTTATTTTACTTTATACGCTATTATTTTACAT
66 TATTAATATTATTATATGTTTTTACTAACTTTATTTATTTTACTTTATA--CTATTATCTTACAT
36584 TTTTTTAA
129 TTTTTTAA
*
36592 TTTTTCTATTATTATTATATATATTTTTTTCCTCCCTCTCATATTTAGCTATTATATATATATGG
1 TTTTTCTATTATTATTATACATATTTTTTTCCTCCCTCTCATATTTAGCTATTATATATATATGG
* * * * * * * *
36657 TATTGATATTCTTATATATTCTTATTAATTTTATTTATTCTACTTTATACGCTATTATTTTACAT
66 TATTAATATTATTATATGTTTTTACTAACTTTATTTATTTTACTTTATA--CTATTATCTTACAT
36722 TTTTT
129 TTTTT
36727 ATATGTACAT
Statistics
Matches: 125, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
137 14 0.11
138 111 0.89
ACGTcount: A:0.26, C:0.12, G:0.04, T:0.58
Consensus pattern (136 bp):
TTTTTCTATTATTATTATACATATTTTTTTCCTCCCTCTCATATTTAGCTATTATATATATATGG
TATTAATATTATTATATGTTTTTACTAACTTTATTTATTTTACTTTATACTATTATCTTACATTT
TTTTAA
Found at i:47423 original size:46 final size:48
Alignment explanation
Indices: 47355--47445 Score: 132
Period size: 46 Copynumber: 1.9 Consensus size: 48
47345 AATACTTCGC
* * *
47355 TTAGGATGAAAACCCGAGAGGGCGTCCTAAGTTGA-AAAA-AAAACGT
1 TTAGGATGAAAACCCGAAAGGGCGCCCTAAATTGAGAAAAGAAAACGT
*
47401 TTAGGGTGAAAACCCGAAAGGGCGCCCTAAATTGAGAAAAGAAAA
1 TTAGGATGAAAACCCGAAAGGGCGCCCTAAATTGAGAAAAGAAAA
47446 AAGAAAAAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 31 0.79
47 4 0.10
48 4 0.10
ACGTcount: A:0.43, C:0.15, G:0.26, T:0.15
Consensus pattern (48 bp):
TTAGGATGAAAACCCGAAAGGGCGCCCTAAATTGAGAAAAGAAAACGT
Found at i:48375 original size:105 final size:105
Alignment explanation
Indices: 48193--48967 Score: 1250
Period size: 105 Copynumber: 7.4 Consensus size: 105
48183 AGGTTTTACC
* *
48193 CAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
48258 ACGAGGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
48298 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
48363 ACGAAGGGACCGCTGGTTGTCAAC-AACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
48402 CAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
48467 ACGAAGGGACCGCTGGTTGTCAACAAATATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
48507 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
48572 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
48612 CAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
48677 ACGAAGGGACCGCTGGTTGTCAATAACCATTTCTC-AATCC
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAAT-T
*
48717 CAGAGTCAATTTCAACTTCACAACGAAGGATATT-GACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
48781 ACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
* * ****
48821 CAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCAAGACAGTATAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
** ** * *
48886 ACGAAGGGACCGCTGACTGTCAACCGACAACTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAAATT
** *
48927 CAGAGCCAATTTCAACTTCACAGTGAATGATATTGGACTCC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
48968 GGAACAATAC
Statistics
Matches: 627, Mismatches: 38, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
104 199 0.32
105 381 0.61
106 47 0.07
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
Found at i:48560 original size:209 final size:210
Alignment explanation
Indices: 48200--48966 Score: 1261
Period size: 209 Copynumber: 3.7 Consensus size: 210
48190 ACCCAGAGCT
* *
48200 AATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAGGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
48265 GACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATA
66 GACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATA
48330 TTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC-AACATTT
131 TTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTT
48394 CTCAAATTCAGAACC
196 CTCAAATTCAGAACC
48409 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
48474 GACCGCTGGTTGTCAACAAATATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATA
66 GACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATA
48539 TTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTT
131 TTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTT
48604 CTCAAATTCAGAACC
196 CTCAAATTCAGAACC
48619 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* * * *
48684 GACCGCTGGTTGTCAATAACCATTTCTC-AATCCCAGAGTCAATTTCAACTTCACAACGAAGGAT
66 GACCGCTGGTTGTCAACAAACATTTCTCAAAT-TCAGAGCCAATTTCAACTTCACAACGAAGGAT
* *
48748 ATT-GACTCCAGACAACGCAAGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACATT
130 ATTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATT
* *
48812 TCTCAATTTCAGAGCC
195 TCTCAAATTCAGAACC
* * ****
48828 AATTTCAACTTCACCACGAAGGATATTGGACTCAAGACAGTATAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
** ** * * ** *
48893 GACCGCTGACTGTCAACCGACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAGTGAATGAT
66 GACCGCTGGTTGTCAACAAAC-ATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGAT
48958 ATTGGACTC
130 ATTGGACTC
48967 CGGAACAATA
Statistics
Matches: 522, Mismatches: 31, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
209 334 0.64
210 181 0.35
211 7 0.01
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (210 bp):
AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
GACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATA
TTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTT
CTCAAATTCAGAACC
Found at i:48769 original size:314 final size:314
Alignment explanation
Indices: 48193--48967 Score: 1275
Period size: 314 Copynumber: 2.5 Consensus size: 314
48183 AGGTTTTACC
*
48193 CAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
*
48258 ACGAGGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
*
48323 AAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
131 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
*
48388 ACATTTCTCAAATTCAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
196 ACATTTCTCAAATCCAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* *
48453 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATATTTCTCAAATT
261 AGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
48507 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
*
48572 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAACCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
*
48637 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATA
131 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
**
48702 ACCATTTCTC-AATCCCAGAGTCAATTTCAACTTCACAACGAAGGATATT-GACTCCAGACAACG
196 A-CATTTCTCAAAT-CCAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
*
48765 CAAGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
259 CAAGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
* * ****
48821 CAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCAAGACAGTATAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
** ** * * **
48886 ACGAAGGGACCGCTGACTGTCAACCGACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAGT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAAATTCAGAGCCAATTTCAACTTCACAAC
*
48951 GAATGATATTGGACTCC
130 GAAGGATATTGGACTCC
48968 GGAACAATAC
Statistics
Matches: 431, Mismatches: 27, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
314 344 0.80
315 87 0.20
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (314 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
ACATTTCTCAAATCCAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
AGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
Done.