genome.fa.s6808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006808.1 Hibiscus syriacus cultivar Beakdansim tig00017281_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94156

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1826--1861	14	2.6	14	90	0	54	8	8	22	61	1.51
9379--9532	69	2.2	70	80	6	168	43	24	18	13	1.86
19241--19348	22	4.9	22	79	2	117	27	17	19	35	1.94
19884--19941	3	19.3	3	79	13	66	31	1	0	67	1.01
21386--21637	30	8.6	29	72	13	176	19	15	7	57	1.63
21386--21637	59	4.3	59	79	9	248	19	15	7	57	1.63
23465--23562	51	1.9	51	85	0	133	41	12	13	32	1.81
32384--32425	21	2.0	21	95	0	75	30	14	7	47	1.71
32420--32517	32	3.0	33	89	7	148	32	7	13	46	1.70
33763--33794	16	2.0	17	88	11	50	43	21	21	12	1.86
35897--35938	21	2.0	21	95	0	75	30	14	7	47	1.71
35933--36031	33	3.0	33	94	1	164	32	7	15	45	1.73
37270--37301	16	2.0	17	88	11	50	43	21	21	12	1.86
38111--38169	29	2.0	31	80	12	70	38	20	6	33	1.79
43768--43854	30	2.9	30	87	0	129	33	20	24	21	1.97
43878--43938	30	2.0	30	93	0	104	31	26	16	26	1.96
43920--43944	12	2.1	12	100	0	50	32	28	8	32	1.86
44319--44490	46	3.8	46	84	8	210	32	21	8	37	1.83
44679--44785	47	2.3	47	98	0	205	30	25	14	28	1.95
49214--49266	26	2.0	26	96	0	97	37	13	11	37	1.80
54572--54603	16	2.1	16	88	11	50	59	3	3	34	1.29
58846--58918	36	2.0	36	83	0	92	45	17	17	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60358--60418	30	2.0	30	84	12	81	52	22	9	14	1.71
64614--64711	21	4.7	21	84	2	117	7	30	17	44	1.75
68432--68486	24	2.5	20	78	18	56	65	0	1	32	1.03
70693--70744	24	2.2	24	96	0	95	17	34	7	40	1.78
71350--71392	22	2.0	22	100	0	86	30	27	18	23	1.98
72512--72627	21	5.7	20	78	5	88	18	22	18	39	1.92
72512--72632	20	5.9	20	76	5	91	19	22	19	38	1.93
72531--72645	61	1.9	61	85	3	160	21	20	20	37	1.95
72615--72688	20	3.6	21	87	5	116	37	18	21	21	1.94
73217--73292	20	3.8	20	85	5	93	51	18	17	13	1.76
73320--73408	20	4.8	20	73	18	77	13	23	16	46	1.83
73949--73987	14	2.8	14	85	14	62	38	0	17	43	1.50
74094--74173	33	2.4	33	89	0	115	47	21	20	11	1.80
74179--74263	19	4.7	19	70	15	72	11	24	21	42	1.86
74216--74309	20	4.7	20	72	13	68	21	20	23	35	1.96
76713--76771	24	2.5	24	85	0	82	35	18	18	27	1.94
77629--77735	20	5.2	21	86	3	121	37	17	21	23	1.94
77609--77764	62	2.5	60	73	11	145	34	17	23	24	1.96
78740--78788	22	2.2	22	81	0	62	36	10	4	48	1.56
81212--81248	16	2.4	16	95	4	67	10	24	0	64	1.25
85043--85133	23	3.9	24	91	1	132	19	28	23	28	1.98
85752--85791	21	1.9	21	94	0	71	30	25	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90333--90510	90	2.0	90	92	0	293	37	11	6	44	1.66
90465--90535	20	3.2	23	72	20	62	46	2	4	46	1.37
90472--90540	22	3.2	21	71	16	70	49	1	4	44	1.31

Tables:   1

The End!