genome.fa.s6809.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006809.1 Hibiscus syriacus cultivar Beakdansim tig00017282_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75653

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127--1151	12	2.1	12	100	0	50	48	12	24	16	1.79
1367--1459	33	2.7	35	83	11	111	35	3	16	45	1.63
5948--6068	35	3.4	36	85	7	158	32	5	19	42	1.74
21234--21265	6	5.5	6	96	3	57	0	15	53	31	1.43
21277--21357	21	3.9	21	77	18	96	38	19	19	22	1.94
21286--21376	42	2.2	42	95	0	164	36	23	19	20	1.95
21307--21382	21	3.6	21	79	13	93	34	25	21	19	1.96
26928--26966	19	2.0	20	90	10	62	61	5	5	28	1.39
27826--27889	29	2.2	29	100	0	128	29	0	20	50	1.49
28064--28127	30	2.1	30	85	5	85	9	7	23	59	1.54
29283--29338	29	1.9	29	81	0	67	37	14	1	46	1.55
32351--32483	60	2.2	60	84	5	162	36	16	3	43	1.66
32369--32497	60	2.1	61	81	2	154	36	19	2	41	1.64
33889--33934	24	2.0	23	87	8	67	50	0	0	50	1.00
34560--34677	21	5.7	21	70	6	71	34	26	17	21	1.95
34665--34913	20	12.4	20	85	4	272	37	26	17	17	1.92
35769--35906	19	7.7	19	73	18	134	45	17	20	16	1.85
35769--35900	53	2.5	53	91	2	203	46	17	19	15	1.83
35896--36013	53	2.2	52	96	3	218	13	24	17	44	1.85
35915--36013	20	5.4	19	83	14	136	14	23	17	45	1.84
38067--38239	19	9.6	19	76	12	141	45	24	19	10	1.81
38161--38217	14	3.7	14	72	20	51	43	24	21	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38142--38234	33	2.8	33	91	0	159	46	22	20	10	1.81
38101--38239	52	2.7	52	75	8	156	46	23	20	9	1.80
38251--38309	14	3.9	14	76	20	64	6	16	28	47	1.72
38235--38342	33	3.3	33	90	2	164	7	19	25	48	1.75
38235--38293	19	3.4	19	75	22	74	6	16	28	47	1.72
38235--38322	19	5.2	18	68	25	66	6	19	27	46	1.75
40271--40334	20	3.2	20	82	4	92	46	15	25	12	1.81
40269--40333	21	3.1	21	82	4	96	47	15	26	10	1.78
40318--40374	14	3.7	14	70	20	51	43	24	22	8	1.81
40269--40391	33	3.5	33	87	8	156	46	19	23	10	1.81
40269--40396	19	7.1	19	67	21	78	45	19	24	10	1.82
40408--40464	14	3.7	14	75	20	60	8	24	22	43	1.81
40392--40471	33	2.4	33	95	0	142	8	21	22	47	1.78
40452--40525	21	3.5	21	80	7	96	13	21	17	47	1.82
40605--40675	33	2.2	33	97	0	133	47	18	23	9	1.78
40627--40675	14	2.8	19	65	28	54	46	20	24	8	1.77
40609--40665	14	3.7	14	70	20	51	45	21	24	8	1.80
41053--41245	20	9.6	20	85	5	246	18	19	27	34	1.95
41050--41310	20	12.9	20	77	10	90	20	19	25	34	1.96
41213--41311	42	2.4	43	78	8	107	20	21	22	36	1.95
47902--47927	11	2.4	11	100	0	52	69	7	7	15	1.35
47919--47968	23	2.2	23	86	10	68	52	12	18	18	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55876--55911	19	1.9	19	88	5	56	47	8	22	22	1.77
57810--57862	24	2.1	24	86	10	70	26	11	30	32	1.91
68466--68504	20	1.9	21	89	5	62	51	17	20	10	1.74

Tables:   1

The End!