genome.fa.s681.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000681.1 Hibiscus syriacus cultivar Beakdansim tig00001323_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57745

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1590--1628	19	2.0	20	90	10	62	48	0	0	51	1.00
8758--8798	21	2.0	21	90	0	64	19	24	17	39	1.92
8811--8957	20	7.3	20	93	0	231	27	25	19	26	1.99
9798--9851	24	2.2	24	93	0	90	22	16	20	40	1.91
10038--10073	14	2.5	14	90	4	54	58	22	13	5	1.56
12277--12345	20	3.5	20	92	4	113	36	26	21	15	1.94
12258--12430	33	5.0	33	82	11	168	41	21	23	14	1.90
12350--12405	19	3.2	19	69	23	59	46	16	21	16	1.84
12589--12625	14	2.6	14	86	0	56	48	21	0	29	1.50
13995--14106	42	2.7	42	75	8	104	23	18	36	21	1.95
14588--14638	20	2.5	20	80	0	66	39	25	19	15	1.91
14623--14672	20	2.5	20	96	0	91	34	22	16	28	1.95
14723--14805	20	4.2	20	93	0	112	24	18	21	36	1.95
14779--14872	33	2.8	34	83	3	127	13	19	22	44	1.85
16753--16902	20	7.6	20	84	2	142	43	22	18	16	1.88
16753--16901	59	2.5	59	83	2	192	43	22	17	16	1.87
17238--17302	22	3.0	22	93	0	112	21	12	40	26	1.88
17501--17576	20	3.8	20	92	0	116	19	17	19	43	1.88
30452--30478	13	2.1	13	100	0	54	37	14	25	22	1.93
31618--31649	2	16.0	2	100	0	64	50	0	0	50	1.00
32591--32642	2	27.0	2	92	7	90	50	0	0	50	1.00
33202--34382	165	7.1	165	86	2	1361	24	20	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33237--34382	331	3.5	330	85	2	1372	24	20	24	30	1.99
33237--34341	496	2.2	494	84	2	1351	24	20	24	29	1.99
33186--34382	84	14.4	84	74	7	962	24	20	24	30	1.99
44809--44898	45	2.0	46	91	2	146	34	7	21	36	1.82
48428--48465	18	2.1	18	100	0	76	23	28	15	31	1.96
49782--49808	2	13.5	2	100	0	54	51	0	0	48	1.00
49808--49842	2	17.5	2	93	0	61	48	2	48	0	1.16

Tables:   1

The End!