Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006810.1 Hibiscus syriacus cultivar Beakdansim tig00017284_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50310

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4616--4666
24
2.2
23
86
6
68
23
19
3
52
1.62
7256--7303
24
2.1
24
84
7
64
27
14
4
54
1.59
14244--14321
29
2.8
26
85
12
102
24
3
10
61
1.45
16080--16127
25
2.0
24
87
4
69
41
0
2
56
1.11
16084--16139
24
2.3
25
78
3
60
46
3
3
46
1.37
17155--17241
28
3.1
28
86
1
122
44
3
8
43
1.50
18278--18348
33
2.2
33
94
0
124
28
16
32
22
1.96
22756--22984
114
2.0
114
100
0
458
31
19
9
39
1.84
22920--23044
57
2.2
57
97
0
232
17
23
11
48
1.79
29269--29333
17
3.6
17
71
15
58
24
30
24
20
1.98
29286--29349
21
3.2
21
69
24
66
20
28
26
25
1.99
29267--29362
38
2.5
38
91
0
156
22
28
22
26
1.99
32520--32619
48
2.1
48
86
0
137
22
11
19
48
1.79
32644--32824
56
3.3
55
78
7
190
32
16
17
33
1.92
36671--37198
131
4.0
132
79
9
637
29
7
29
33
1.85
36851--37260
132
3.0
133
70
15
397
30
6
31
31
1.82
37187--37212
12
2.2
12
100
0
52
38
0
42
19
1.51
37240--37556
3
105.7
3
100
0
634
33
0
66
0
0.92
41115--41209
48
2.0
48
89
0
145
23
11
17
47
1.80
41229--41401
54
3.2
54
79
5
179
30
17
18
34
1.94
48370--48505
20
6.7
20
74
9
114
27
18
24
30
1.98
48363--48443
41
2.0
41
85
0
108
32
17
22
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48370--48505
61
2.2
61
86
0
191
27
18
24
30
1.98
49095--49244
32
4.7
32
78
1
124
31
16
12
39
1.86

Tables:   1

The End!