Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006811.1 Hibiscus syriacus cultivar Beakdansim tig00017287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65351
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:2302 original size:232 final size:232
Alignment explanation
Indices: 1896--2354 Score: 792
Period size: 232 Copynumber: 2.0 Consensus size: 232
1886 AAGTAGGCAA
**
1896 CACTTGATTAAGATCATGCATGTACCTACTGCTTAGTACTGTGTCTTTAGCATGCTTGTGATTAT
1 CACTTGATTAAGATCATGCATGTACCTACTGCTTAGTACCATGTCTTTAGCATGCTTGTGATTAT
* *
1961 GAAACTCATAATGTTGTTCTATATTAGAGATTATACCACTGAGCTTTATAAGCTCAGCGTTCAGA
66 GAAACTCATAATGTTGTTCTAGATTAGAGATTATACCACCGAGCTTTATAAGCTCAGCGTTCAGA
* * *
2026 TGTTTTCGTTAGCAGGTTTTTAGCTTGGACCATTCGTGGAGCACTATCACAACAACACTTTCAGT
131 TGTTTTCGTTAGCAGGTTTTTAGCCTGGACCATTCGTAGAGCACTATCACAACAACACTTTCAGC
2091 ATTCTCCATCAGAGTATTGTACTGTAACTTTAATTGG
196 ATTCTCCATCAGAGTATTGTACTGTAACTTTAATTGG
*
2128 CACTTGATTAAGATCATGCATGTACCTACTGCTTAGTACCATGTCTTTAGTATGCTTGTGATTAT
1 CACTTGATTAAGATCATGCATGTACCTACTGCTTAGTACCATGTCTTTAGCATGCTTGTGATTAT
* *
2193 GAAACTCATAATGTTGTTCTAGATTGGAGATTATACTACCGAGCTTTATAAGCTCAGCGTTCAGA
66 GAAACTCATAATGTTGTTCTAGATTAGAGATTATACCACCGAGCTTTATAAGCTCAGCGTTCAGA
* *
2258 TGTTTTTGTTAGCAGGTTTTTAGCCTGGACCATTCGTAGAGCACTGTCACAACAACACTTTCAGC
131 TGTTTTCGTTAGCAGGTTTTTAGCCTGGACCATTCGTAGAGCACTATCACAACAACACTTTCAGC
* *
2323 ATTCTCCGTCAGAGTATTGTATTGTAACTTTA
196 ATTCTCCATCAGAGTATTGTACTGTAACTTTA
2355 GTAGGCATAT
Statistics
Matches: 213, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
232 213 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (232 bp):
CACTTGATTAAGATCATGCATGTACCTACTGCTTAGTACCATGTCTTTAGCATGCTTGTGATTAT
GAAACTCATAATGTTGTTCTAGATTAGAGATTATACCACCGAGCTTTATAAGCTCAGCGTTCAGA
TGTTTTCGTTAGCAGGTTTTTAGCCTGGACCATTCGTAGAGCACTATCACAACAACACTTTCAGC
ATTCTCCATCAGAGTATTGTACTGTAACTTTAATTGG
Found at i:2587 original size:10 final size:10
Alignment explanation
Indices: 2551--2579 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
2541 ACCCACTTTT
2551 AAATAAATTA
1 AAATAAATTA
2561 AAATAAATTA
1 AAATAAATTA
2571 AAATAAATT
1 AAATAAATT
2580 TAATTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
AAATAAATTA
Found at i:2831 original size:2 final size:2
Alignment explanation
Indices: 2824--2859 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
2814 AGATATTTTA
2824 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2860 GATTAAAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:3458 original size:14 final size:14
Alignment explanation
Indices: 3439--3489 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
3429 CGGTCGAACC
3439 GAGTCAACTCACCT
1 GAGTCAACTCACCT
3453 GAGTCAAC-CAACC-
1 GAGTCAACTC-ACCT
* **
3466 AAGTCAACTCGTCT
1 GAGTCAACTCACCT
3480 GAGTCAACTC
1 GAGTCAACTC
3490 CTCCGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 9 0.30
14 21 0.70
ACGTcount: A:0.31, C:0.33, G:0.16, T:0.20
Consensus pattern (14 bp):
GAGTCAACTCACCT
Found at i:3473 original size:27 final size:27
Alignment explanation
Indices: 3435--3487 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
3425 AAATCGGTCG
*
3435 AACCGAGTCAACTCACCTGAGTCAACC
1 AACCAAGTCAACTCACCTGAGTCAACC
**
3462 AACCAAGTCAACTCGTCTGAGTCAAC
1 AACCAAGTCAACTCACCTGAGTCAAC
3488 TCCTCCGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.34, G:0.15, T:0.17
Consensus pattern (27 bp):
AACCAAGTCAACTCACCTGAGTCAACC
Found at i:3521 original size:14 final size:15
Alignment explanation
Indices: 3501--3542 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
3491 TCCGTCAACC
3501 CGTTGACTTTGAAAT
1 CGTTGACTTTGAAAT
*
3516 -GTTGACTTTG-ACT
1 CGTTGACTTTGAAAT
3529 CGTTGACTTTGAAA
1 CGTTGACTTTGAAA
3543 AATAGTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 2 0.09
14 20 0.87
15 1 0.04
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (15 bp):
CGTTGACTTTGAAAT
Found at i:19762 original size:14 final size:14
Alignment explanation
Indices: 19745--19784 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
19735 AAAAAAAAAC
19745 AAAAAAAAGCC---
1 AAAAAAAAGCCAAA
19756 AAAAAAAAGCCAAA
1 AAAAAAAAGCCAAA
19770 AAAAAAAAGCCAAA
1 AAAAAAAAGCCAAA
19784 A
1 A
19785 TTTCAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.42
14 15 0.58
ACGTcount: A:0.78, C:0.15, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGCCAAA
Found at i:19784 original size:12 final size:11
Alignment explanation
Indices: 19734--19774 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
19724 CTATTTTTTA
**
19734 AAAAAAAAAAC
1 AAAAAAAAGCC
19745 AAAAAAAAGCC
1 AAAAAAAAGCC
19756 AAAAAAAAGCC
1 AAAAAAAAGCC
19767 AAAAAAAA
1 AAAAAAAA
19775 AAAGCCAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.83, C:0.12, G:0.05, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGCC
Found at i:38051 original size:20 final size:20
Alignment explanation
Indices: 38014--38052 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
38004 TTAGTCATTT
*
38014 ATAGTCATGTTTTATTTTAC
1 ATAGTCATGTTATATTTTAC
38034 ATAGTCAT-TTATAGTTTTA
1 ATAGTCATGTTATA-TTTTA
38053 TAATTACAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.54
Consensus pattern (20 bp):
ATAGTCATGTTATATTTTAC
Found at i:39827 original size:95 final size:96
Alignment explanation
Indices: 39657--39858 Score: 266
Period size: 95 Copynumber: 2.1 Consensus size: 96
39647 CCGTTGAGAC
* * * * * * *
39657 AGTATCGATA-TCGTTGTAAGGGTTTCGATACCTTGCAAACACTGGATCTAATTTTGGTGTCGAT
1 AGTATCGATACTCGTGGTAAGGGTATCGATACCATGCAAACACTGAAGCTAATTTCGGTATCGAT
* *
39721 GCCGGAAGGGGTATCGGTACCATAGTATAGT
66 ACCGGAAGGGGTATCGGTACCATAGTATAGA
* *
39752 AGTATCGATACTC-TGGTAAGGGTATCGATACCATG-AAACATTGAAGCTAATTTCGGTATTGAT
1 AGTATCGATACTCGTGGTAAGGGTATCGATACCATGCAAACACTGAAGCTAATTTCGGTATCGAT
39815 ACCGGAAGGGGGTATCGGTACCATAGTATAGA
66 ACCGGAA-GGGGTATCGGTACCATAGTATAGA
*
39847 AGTATCGGTACT
1 AGTATCGATACT
39859 AGGATAGAAC
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
94 28 0.30
95 63 0.68
96 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (96 bp):
AGTATCGATACTCGTGGTAAGGGTATCGATACCATGCAAACACTGAAGCTAATTTCGGTATCGAT
ACCGGAAGGGGTATCGGTACCATAGTATAGA
Found at i:39867 original size:20 final size:22
Alignment explanation
Indices: 39826--39867 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
39816 CCGGAAGGGG
*
39826 GTATCGGTACCATAGTATAGAA
1 GTATCGGTACCATAGGATAGAA
39848 GTATCGGTA-C-TAGGATAGAA
1 GTATCGGTACCATAGGATAGAA
39868 CTATTGATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 1 0.05
22 9 0.47
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (22 bp):
GTATCGGTACCATAGGATAGAA
Found at i:40336 original size:47 final size:47
Alignment explanation
Indices: 40267--40576 Score: 473
Period size: 47 Copynumber: 6.6 Consensus size: 47
40257 AAATCAAATT
*
40267 CATAATTGAAAATGCAAGAAAGGATG-ATTTAAGGCATGAACGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCA-TTAAGGCATGAACGGATGC
* *
40314 CATAATTGAAAATGCATAAAAGGATGCATTAAGGCATGAAAGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* **
40361 CAAAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATAA
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
*
40408 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGGTGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
*
40455 CATAATTGAAAATGCATGAAAGGATGCATTAAGGTATGAACGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
*
40502 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
40549 CATGTATATT-AAAATGCAT-AAATGGATG
1 CA--TA-ATTGAAAATGCATGAAA-GGATG
40577 TGTTAATACG
Statistics
Matches: 242, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 219 0.90
48 4 0.02
49 16 0.07
50 3 0.01
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.22
Consensus pattern (47 bp):
CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
Found at i:40378 original size:27 final size:26
Alignment explanation
Indices: 40300--40481 Score: 112
Period size: 27 Copynumber: 7.5 Consensus size: 26
40290 ATGATTTAAG
*
40300 GCATGAACGGATGCCATAATTGAAAAT
1 GCATGAAAGGATGCCA-AATTGAAAAT
* *
40327 GCATAAAAGGATG-C--ATT---AAG
1 GCATGAAAGGATGCCAAATTGAAAAT
40347 GCATGAAAGGATGCCAAAATTGAAAAT
1 GCATGAAAGGATGCC-AAATTGAAAAT
*
40374 GCATGAAAGGATG-C--ATT---AAG
1 GCATGAAAGGATGCCAAATTGAAAAT
* **
40394 GCATGAACGGATAACATAATTGAAAAT
1 GCATGAAAGGATGCCA-AATTGAAAAT
*
40421 GCATGAAAGGATG-C--ATT---AAG
1 GCATGAAAGGATGCCAAATTGAAAAT
* *
40441 GCATGAACGGGTGCCATAATTGAAAAT
1 GCATGAAAGGATGCCA-AATTGAAAAT
40468 GCATGAAAGGATGC
1 GCATGAAAGGATGC
40482 ATTAAGGTAT
Statistics
Matches: 117, Mismatches: 17, Indels: 42
0.66 0.10 0.24
Matches are distributed among these distances:
20 40 0.34
21 3 0.03
23 9 0.08
24 9 0.08
26 3 0.03
27 53 0.45
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.20
Consensus pattern (26 bp):
GCATGAAAGGATGCCAAATTGAAAAT
Found at i:46570 original size:20 final size:20
Alignment explanation
Indices: 46534--46571 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46524 ATACCATAGT
* *
46534 ATAGAAGTATCGGTACTAGG
1 ATAGAAGTACCGATACTAGG
46554 ATAGAAGTACCGATACTA
1 ATAGAAGTACCGATACTA
46572 TGGAGCCTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (20 bp):
ATAGAAGTACCGATACTAGG
Found at i:47022 original size:47 final size:47
Alignment explanation
Indices: 46954--47327 Score: 563
Period size: 47 Copynumber: 8.0 Consensus size: 47
46944 AAATCAAATT
* *
46954 CATAATTGAAAATGCATGAAAGGATACATTAAGGCATGAACGGATGT
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
47001 CATAATTGAAAATGCATGAAAGGATGCGTTAAGGCATGAATGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
47048 CATAATTAAAAATGCATGAAAGGATGCATTAAGGCATGAACAGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
47095 CCTAATTGAAAATGCATGAAAGGATACATTAAGGCATGAACGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
47142 CATAGTTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGAATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* * *
47189 CATAATTGAAAATGCATGAAAGGATGCATTAAAGCATGAACAGATGA
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
**
47236 CATAATT-AAAATGCATGAAAGGATGCATTAAGGCATGAAAAGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* * *
47282 CATAATTGAAAATGCATGAAA-TACTGCATTAAGGCTTGAAAGGATG
1 CATAATTGAAAATGCATGAAAGGA-TGCATTAAGGCATGAACGGATG
47328 TCATGTACAT
Statistics
Matches: 298, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 44 0.15
47 254 0.85
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22
Consensus pattern (47 bp):
CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
Found at i:47025 original size:27 final size:25
Alignment explanation
Indices: 46954--47302 Score: 142
Period size: 20 Copynumber: 14.8 Consensus size: 25
46944 AAATCAAATT
46954 CATAATTGAAAATGCATGAAAGGAT-
1 CATAATT-AAAATGCATGAAAGGATG
* * *
46979 -A-CATT--AAGGCATGAACGGATG
1 CATAATTAAAATGCATGAAAGGATG
47000 TCATAATTGAAAATGCATGAAAGGATG
1 -CATAATT-AAAATGCATGAAAGGATG
* * *
47027 C---GTT--AAGGCATGAATGGATG
1 CATAATTAAAATGCATGAAAGGATG
47047 CCATAATTAAAAATGCATGAAAGGATG
1 -CATAATT-AAAATGCATGAAAGGATG
*
47074 C---ATT--AAGGCATGAACA-GATG
1 CATAATTAAAATGCATGAA-AGGATG
*
47094 CCCTAATTGAAAATGCATGAAAGGAT-
1 -CATAATT-AAAATGCATGAAAGGATG
* * *
47120 -A-CATT--AAGGCATGAACGGATG
1 CATAATTAAAATGCATGAAAGGATG
*
47141 CCATAGTTGAAAATGCATGAAAGGATG
1 -CATAATT-AAAATGCATGAAAGGATG
* * *
47168 C---ATT--AAGGCATGAACGAATG
1 CATAATTAAAATGCATGAAAGGATG
47188 CCATAATTGAAAATGCATGAAAGGATG
1 -CATAATT-AAAATGCATGAAAGGATG
47215 C---ATT-AAA-GCATGAACA-GATG
1 CATAATTAAAATGCATGAA-AGGATG
47235 ACATAATTAAAATGCATGAAAGGATG
1 -CATAATTAAAATGCATGAAAGGATG
* *
47261 C---ATT--AAGGCATGAAAAGATG
1 CATAATTAAAATGCATGAAAGGATG
47281 CCATAATTGAAAATGCATGAAA
1 -CATAATT-AAAATGCATGAAA
47303 TACTGCATTA
Statistics
Matches: 240, Mismatches: 32, Indels: 102
0.64 0.09 0.27
Matches are distributed among these distances:
20 91 0.38
21 10 0.04
22 3 0.01
23 18 0.08
24 20 0.08
25 5 0.02
26 16 0.07
27 77 0.32
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22
Consensus pattern (25 bp):
CATAATTAAAATGCATGAAAGGATG
Found at i:51916 original size:29 final size:30
Alignment explanation
Indices: 51855--51917 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
51845 CAAAATACAT
* * *
51855 AACTTTTGAAAATTATATTTTTGGTCCCTA
1 AACTATTGAAAATTATATCTTTAGTCCCTA
*
51885 AACTATTGAAAATTA-CTCTTTAGTCCCTA
1 AACTATTGAAAATTATATCTTTAGTCCCTA
51914 AACT
1 AACT
51918 TTTCAAATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.41
Consensus pattern (30 bp):
AACTATTGAAAATTATATCTTTAGTCCCTA
Found at i:54087 original size:2 final size:2
Alignment explanation
Indices: 54080--54226 Score: 127
Period size: 2 Copynumber: 72.0 Consensus size: 2
54070 TAACTCATAC
* * *
54080 TA TA TA TA TA TA TA TA -A TA TA CA CA CTG TA TA CTA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA
* * * * * * * *
54123 TA TA TA TA AA AA AA CTA TA TA CA TT TT TCA AA AA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA T-A TA TA TA TA TA TA TA
*
54167 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TCA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
54209 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
54227 CACACACACA
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
1 2 0.02
2 119 0.96
3 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (2 bp):
TA
Found at i:59164 original size:20 final size:20
Alignment explanation
Indices: 59135--59173 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
59125 TTTCCACCAC
*
59135 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
59155 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
59174 TATGAGCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:65081 original size:21 final size:21
Alignment explanation
Indices: 65039--65091 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
65029 TTTTATCTTG
* *
65039 TCCTCTATCTTTCTTAATTTA
1 TCCTCTATCTTTCCTAACTTA
65060 TCCTCTAT-TTTCCTAGACTTA
1 TCCTCTATCTTTCCTA-ACTTA
*
65081 TTCTC-ATCTTT
1 TCCTCTATCTTT
65092 GTCAAATTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.17, C:0.26, G:0.02, T:0.55
Consensus pattern (21 bp):
TCCTCTATCTTTCCTAACTTA
Done.