Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006812.1 Hibiscus syriacus cultivar Beakdansim tig00017291_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46392

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5415--5450
18
2.0
18
100
0
72
33
33
11
22
1.89
5418--5459
18
2.3
18
88
8
59
40
30
9
19
1.83
7880--7906
11
2.5
11
100
0
54
29
29
0
40
1.57
8727--8770
22
2.0
21
86
4
61
63
0
6
29
1.20
8727--8765
19
2.0
21
90
10
64
66
0
5
28
1.12
10752--11422
106
6.4
106
93
1
1073
22
19
25
32
1.98
10752--11422
211
3.2
211
94
1
1123
22
19
25
32
1.98
12223--12247
1
25.0
1
100
0
50
0
0
0
100
0.00
22977--23020
22
2.0
21
86
4
61
63
0
6
29
1.20
22977--23015
19
2.0
21
90
10
64
66
0
5
28
1.12
30498--30556
28
2.1
28
84
6
75
25
8
6
59
1.51
32313--32412
2
50.0
2
97
0
191
50
1
0
49
1.07
32863--32888
2
13.0
2
100
0
52
0
50
0
50
1.00
35775--35834
22
2.8
21
76
5
66
43
1
1
53
1.20
39315--39355
22
1.9
22
90
5
66
31
0
0
68
0.90
40529--40594
17
3.4
21
76
23
81
50
30
13
6
1.66
40539--40580
17
2.5
17
100
0
84
42
33
14
9
1.78
40690--40716
5
5.4
5
100
0
54
44
37
18
0
1.50
42915--42954
15
2.7
15
88
0
62
47
10
2
40
1.50
43963--44010
18
2.7
18
90
0
78
22
35
16
25
1.95
45197--45242
22
2.1
22
100
0
92
21
41
8
28
1.83

Tables:   1

The End!