genome.fa.s6813.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006813.1 Hibiscus syriacus cultivar Beakdansim tig00017315_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61172

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336--360	6	4.2	6	100	0	50	16	16	20	48	1.82
1592--1645	20	2.7	21	88	8	85	46	14	14	24	1.83
1686--2060	198	1.9	195	82	8	463	42	12	14	30	1.83
1778--2148	195	1.9	193	81	6	453	39	13	15	31	1.85
2430--2466	14	2.6	14	95	0	65	13	0	45	40	1.43
8075--8124	19	2.7	19	84	3	66	32	4	10	54	1.52
8089--8127	6	6.3	6	87	3	51	30	2	10	56	1.46
8080--8127	12	3.9	12	83	5	60	33	4	10	52	1.55
9686--9727	21	2.0	21	86	9	59	38	11	7	42	1.69
9761--9799	21	1.9	19	85	10	51	46	7	12	33	1.71
9589--10251	199	3.3	197	84	6	820	39	13	14	33	1.85
11112--11154	2	22.0	2	95	4	79	51	0	0	48	1.00
15532--15575	21	2.0	22	86	4	63	47	4	11	36	1.60
15909--15975	23	2.9	23	91	4	100	19	25	23	31	1.98
16884--16915	11	2.9	11	100	0	64	28	6	28	37	1.81
20905--20960	18	3.1	18	100	0	112	48	0	21	30	1.51
23066--23175	22	5.0	22	87	1	141	20	20	33	24	1.97
23461--23505	22	2.0	22	83	8	56	37	0	0	62	0.96
28281--28359	30	2.6	30	81	2	86	59	8	10	21	1.57
29735--29788	3	17.7	3	92	3	90	64	0	1	33	1.04
30023--30125	47	2.3	47	86	6	142	27	19	28	25	1.99
30016--30165	47	3.5	42	80	11	128	27	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30016--30267	131	1.9	130	83	4	328	27	19	28	24	1.98
30016--30267	43	5.7	43	71	15	167	27	19	28	24	1.98
36913--36979	25	2.7	25	76	0	71	40	35	5	17	1.75
42241--42284	14	3.1	14	100	0	88	6	50	6	36	1.56
42858--42932	31	2.5	29	81	8	87	41	12	4	42	1.60
43065--43140	31	2.5	31	78	16	86	46	11	7	34	1.70
46899--46937	19	2.1	19	85	9	53	38	7	0	53	1.30
46957--46988	2	16.0	2	100	0	64	50	0	0	50	1.00
50685--50730	18	2.5	20	75	13	53	19	2	2	76	1.00
50689--50773	22	4.0	22	69	17	70	21	1	7	70	1.17
53710--53785	31	2.4	31	91	2	125	38	2	17	42	1.63
55564--55632	21	3.5	21	72	22	76	27	24	24	23	2.00
55546--55656	38	2.9	39	85	5	136	27	20	26	26	1.99
57573--57681	53	2.1	54	92	3	186	25	24	12	36	1.91
57994--58064	30	2.6	28	82	17	96	70	0	19	9	1.15
57994--58040	15	3.1	16	84	9	71	70	0	19	10	1.16
57998--58049	16	3.4	16	82	12	56	73	0	21	5	1.04
57994--58066	24	2.7	26	87	12	96	71	0	19	9	1.13
58059--58101	8	5.0	8	81	13	50	79	2	13	4	1.00
58013--58138	24	4.8	25	70	18	87	73	0	19	6	1.10
57994--58074	25	3.0	25	80	12	83	72	0	18	8	1.09
58055--58141	18	4.7	17	72	16	57	74	1	19	4	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58000--58085	40	2.1	40	82	2	100	73	1	19	5	1.10
59715--59915	41	4.9	42	79	10	218	28	13	28	28	1.95
59715--59912	83	2.4	84	85	5	269	28	13	29	28	1.94
59715--59915	42	4.9	41	79	8	210	28	13	28	28	1.95
60207--60311	41	2.5	42	86	3	133	24	21	25	27	2.00
60255--60311	21	2.8	19	72	12	60	24	26	21	28	1.99
60923--61168	127	1.9	126	83	7	311	30	21	18	29	1.97

Tables:   1

The End!