genome.fa.s6815.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006815.1 Hibiscus syriacus cultivar Beakdansim tig00017319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89746

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411--1453	19	2.3	19	95	0	77	13	34	30	20	1.92
1749--1877	45	3.0	43	77	15	151	44	2	1	51	1.23
1807--1865	16	3.9	16	70	20	63	40	1	0	57	1.09
1807--1847	18	2.4	17	88	8	57	41	0	0	58	0.98
1921--2087	42	4.0	40	72	16	135	55	1	3	38	1.28
8337--8376	17	2.4	17	100	0	80	20	17	30	32	1.95
16044--16094	21	2.4	22	83	6	70	21	0	9	68	1.18
17459--17511	24	2.2	24	82	0	70	47	9	15	28	1.76
19016--19073	20	2.9	20	89	0	89	22	25	24	27	2.00
22246--22290	22	2.0	24	86	8	67	57	6	0	35	1.25
22775--23071	34	8.2	35	80	9	294	46	4	6	42	1.48
22777--23071	106	2.7	107	87	7	391	46	4	6	42	1.48
23008--23053	24	1.9	24	82	8	58	45	4	10	39	1.59
23124--23148	13	1.9	13	100	0	50	24	0	4	72	1.02
25374--25490	56	2.1	56	88	3	173	29	13	10	46	1.77
27455--27503	23	2.2	22	85	7	64	46	0	2	51	1.12
27503--27536	7	4.9	7	100	0	68	26	0	0	73	0.83
44071--44128	22	2.7	21	81	5	53	51	0	1	46	1.11
44167--44218	2	26.0	2	96	0	95	48	0	0	51	1.00
48262--48396	20	6.8	20	71	5	94	41	18	15	24	1.89
48232--48336	40	2.6	40	80	5	115	41	19	17	21	1.90
48262--48396	60	2.2	60	83	5	157	41	18	15	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48229--48408	100	1.8	100	91	0	297	42	18	15	23	1.88
48414--48510	19	4.9	19	88	3	113	35	15	13	36	1.87
48414--48529	58	2.0	58	81	5	135	35	16	12	35	1.87
48503--48549	18	2.5	19	79	6	51	29	21	14	34	1.93
49447--49500	24	2.2	24	90	0	81	22	18	18	40	1.91
51317--51367	20	2.5	20	75	12	59	50	19	13	15	1.77
51318--51370	19	2.7	20	80	16	65	49	22	13	15	1.79
51881--52013	20	6.7	20	83	8	155	15	15	25	42	1.87
51902--52053	60	2.5	60	87	6	202	17	16	25	40	1.90
51947--52072	20	6.3	20	80	15	136	19	18	25	37	1.94
51902--52072	60	2.8	60	83	6	152	17	16	25	40	1.90
59462--59491	14	2.1	15	93	6	53	33	0	0	66	0.92
59456--59500	23	2.0	23	86	0	63	37	2	2	57	1.23
59579--59744	33	5.0	33	75	13	160	42	5	6	45	1.51
59655--59807	26	6.4	22	82	10	67	41	5	7	45	1.57
59706--59798	26	3.6	26	100	0	186	39	7	7	45	1.61
61320--61355	17	2.1	17	89	0	54	36	8	0	55	1.30
76214--76416	19	11.2	17	67	17	63	69	1	5	22	1.18
76209--76272	24	2.7	22	81	13	74	73	0	3	23	0.97
76214--76252	18	2.2	17	86	4	51	74	0	5	20	1.01
76258--76302	3	16.3	3	80	17	53	66	0	2	31	1.04
76238--76300	23	2.8	22	73	22	58	71	0	1	26	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76253--76324	26	2.6	28	75	22	71	66	2	1	29	1.14
76209--76417	17	12.2	17	66	28	56	70	1	5	22	1.17
77884--78029	38	4.0	37	81	10	176	28	10	17	43	1.83
77928--78040	33	3.3	33	85	8	129	32	12	17	37	1.87
77884--78040	37	4.5	33	82	9	147	30	11	17	40	1.85
78055--78139	30	2.9	30	82	6	95	36	9	17	36	1.82
78139--78208	36	1.9	36	88	0	104	41	14	20	24	1.89
78223--78408	36	5.4	36	70	16	151	38	13	20	27	1.90
78094--78498	101	4.0	101	92	3	643	37	13	19	29	1.90
78495--78984	36	13.7	36	65	15	140	40	14	17	28	1.88
78481--78997	143	3.6	144	90	2	747	40	14	17	27	1.88
78481--78997	72	7.2	72	92	2	747	40	14	17	27	1.88
84430--84507	5	14.2	5	78	14	57	73	0	3	23	1.00
84430--84648	17	12.8	16	67	22	67	70	2	6	21	1.21
84430--84532	23	4.3	23	76	17	86	70	1	2	24	1.11
84454--84619	88	1.9	87	79	10	187	68	2	6	22	1.23
86364--86411	25	2.0	24	87	4	69	39	6	0	54	1.26
86380--86432	23	2.3	22	87	12	72	37	5	0	56	1.23
87280--87320	13	3.2	13	85	0	64	58	0	0	41	0.98
87760--87812	21	2.5	21	84	0	70	20	26	18	33	1.96
87802--88061	20	12.6	20	74	12	152	32	20	18	27	1.96
87802--88061	40	6.3	40	74	13	179	32	20	18	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87898--87934	19	1.9	19	100	0	74	21	24	16	37	1.93
88608--88679	20	3.6	19	79	7	81	51	18	16	13	1.77
88669--88710	17	2.6	16	81	7	57	50	23	16	9	1.75

Tables:   1

The End!