Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006816.1 Hibiscus syriacus cultivar Beakdansim tig00017324_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 125807
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Found at i:1028 original size:84 final size:83
Alignment explanation
Indices: 666--1768 Score: 955
Period size: 84 Copynumber: 13.4 Consensus size: 83
656 ATTTTATTGA
* * * * * * * * * *
666 CAGATAGCCCTTCTTGCCTTGAGCTATGTTGTAGATGACGTGCCTTGGAGCTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGTGTAGTCGAA
*
731 CTCAAAGGTC--T-TTGG
66 CTCGAAGGTCTTTGTTGG
* * * * *
746 CA-ATAACCCTTCTAGCCTTGAGTTATACCGCAAATGATGTGTCGTT-GAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTG-CCTTCGAGCTGAGTGTAGTCGA
* *
809 ACCCAAAGGTCTTTGTTGG
65 ACTCGAAGGTCTTTGTTGG
* *
828 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCC-TCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCG-AGCTGAGTGTAGTCGA
*
892 ACTCGAGGGTC----TTGG
65 ACTCGAAGGTCTTTGTTGG
* * * * * *
907 CAG-TAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTAGAACTGAGTGTAGTCAAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGTGTAGTCGAA
*
971 CTCTAAGGTCTTTGGTTGG
66 CTCGAAGGTCTTT-GTTGG
* * * * * * *
990 CAGATAACCCTTTTTGACTTAAGTTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCAAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGTGTAGTCGAA
* *
1055 CTCGAAGGTCCTTTGGTGA
66 CTCGAAGGT-CTTTGTTGG
* * * * *
1074 CAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTATAATCGA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCG-AGCTGAGTGTAGTCGA
*
1139 ACTTG-AGGTC--T-TTGG
65 ACTCGAAGGTCTTTGTTGG
* * * * * *
1154 CAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGTCATT-GAGCTGAGCGTAGTCAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTG-CCTTCGAGCTGAGTGTAGTCGA
* *
1218 ACTCAAAGGTTTTTTGTTGG
65 ACTCGAAGG-TCTTTGTTGG
* * * * * * *
1238 CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAAT--TATGCCTTGGAGCTGAGCGTAGTTGAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGTGTAGTCGAA
* *
1301 CTTGAAGGTCTTT-TAGTGA
66 CTCGAAGGTCTTTGT--TGG
* ** * * * * * *
1320 CAGATAACCCTTCTAGCCTTGAGTTATATTGTAATTGATGTGCCCTCGAAGCTAAGTATAATCGA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCG-AGCTGAGTGTAGTCGA
* * * *
1385 AATTGAGGGTC--T-TTGA
65 ACTCGAAGGTCTTTGTTGG
* * * * * * ** *
1401 CAGATATCCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCTTGGAGCTGAGCATAGTCAAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGTGTAGTCGAA
1466 CTCGAAGGTCTTTGGTTGG
66 CTCGAAGGTCTTT-GTTGG
* * * * *
1485 CAGATAACCCTTCTTGCCTTAAGTTATGCTGCAAATGTTGGTGCCTTTGAGTTGAGTGTAATCGA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGAT-GTGCCTTCGAGCTGAGTGTAGTCGA
1550 ACTCGAAGGTC--T-TTGG
65 ACTCGAAGGTCTTTGTTGG
* * * * * * * *
1566 CAGATAGCCCTTCTCGACTTAAGCTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTTGAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGTGTAGTCGAA
* *
1631 CTCGAAGGTC-TTGGTGA
66 CTCGAAGGTCTTTGTTGG
* * * *
1648 CAGATAACCCTTTTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGCT-TAGTCG
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCG-AGCTGAG-TGTAGTCG
1712 AACTCGAAGGTCTTTGGTTGG
64 AACTCGAAGGTCTTT-GTTGG
* *
1733 AAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAAT
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAAT
1769 AGAAAAAATT
Statistics
Matches: 831, Mismatches: 153, Indels: 73
0.79 0.14 0.07
Matches are distributed among these distances:
78 58 0.07
79 79 0.10
80 100 0.12
81 92 0.11
82 106 0.13
83 97 0.12
84 194 0.23
85 105 0.13
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (83 bp):
CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTCGAGCTGAGTGTAGTCGAA
CTCGAAGGTCTTTGTTGG
Found at i:1101 original size:246 final size:247
Alignment explanation
Indices: 700--1768 Score: 1207
Period size: 246 Copynumber: 4.3 Consensus size: 247
690 TATGTTGTAG
* *
700 ATGACGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTC--T--TTGGCA-ATAACCCTTCTA
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTA
* * * * * * * * *
760 GCCTTGAGTTATACCGCAAATGATGTGTCGTTGAGCTGAGTGTAATCGAACCCAAAGGTCTTTGT
66 GCCTTAAGTTATGCTGCAAATGATATG-CCTTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTGG
* *
825 TGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTG-CCTCGAAGCTGAGTGTAAT
130 TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTATAAT
*
889 CGAACTCGAGGGTC-TTGGCAG-TAGCCCTTCTCGACTTAAGTTATGCTGCAA
195 CGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAA
* * * * * *
940 ATGATGTGCCTTAGAACTGAGTGTAGTCAAACTCTAAGGTCTTTGGTTGGCAGATAACCCTTTTT
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTA
* * *
1005 GACTTAAGTTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGTCCTTTG
66 GCCTTAAGTTATGCTGCAAATGATATGCCTT-GAGCTGAGCGTAATCGAACTCGAAGGT-CTTTG
*
1070 GTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTATAA
129 GTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTATAA
* *
1135 TCGAACTTGA-GGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAA
194 TCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAA
* * *
1188 ATGATGTGTCATT-GAGCTGAGCGTAGTCAAACTCAAAGGTTTTTTGTTGGCAGATAACCCTTCT
1 ATGATGTG-CCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCT
* * * * * *
1252 CGACTTAAGTTATGCTGTAAAT--TATGCCTTGGAGCTGAGCGTAGTTGAACTTGAAGGTCTTTT
65 AGCCTTAAGTTATGCTGCAAATGATATGCCTT-GAGCTGAGCGTAATCGAACTCGAAGGTC-TTT
* ** * * *
1315 AGTGACAGATAACCCTTCTAGCCTTGAGTTATATTGTAATTGATGTGCCCTCGAAGCTAAGTATA
128 GGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTATA
* * * * *
1380 ATCGAAATTGAGGGTCTTTGACAGATATCCCTTCTCGACTTAAGTTATGCTGTAA
193 ATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAA
* * * *
1435 ATGATATGCCTTGGAGCTGAGCATAGTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTT
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTA
* * * *
1500 GCCTTAAGTTATGCTGCAAATGTTGGTGCCTTTGAGTTGAGTGTAATCGAACTCGAAGGTCTTT-
66 GCCTTAAGTTATGCTGCAAATGAT-ATGCC-TTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTG
* * * * * * * * ** *
1564 G-G-CAGATAGCCCTTCTCGACTTAAGCTATGTTGCAAATGATGTG-CCTTGGAGCTGAGCGTAG
129 GTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTATAA
* * * * * * * *
1626 TTGAACTCGAAGGTCTTGGTGACAGATAACCCTTTTAGCCTTGAGTTATGCTGTAA
194 TCGAACTCGAGGGTCTT--TGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAA
* * * * * *
1682 ATGATGTGCCCTCGAAGCTGAGCTTAGTCGAACTCGAAGGTCTTTGGTTGGAAGATAACCCTTCT
1 ATGATGTG-CCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCT
*
1747 AGCCTTGAGTTATGCTGCAAAT
65 AGCCTTAAGTTATGCTGCAAAT
1769 AGAAAAAATT
Statistics
Matches: 713, Mismatches: 95, Indels: 34
0.85 0.11 0.04
Matches are distributed among these distances:
240 35 0.05
242 1 0.00
244 9 0.01
245 80 0.11
246 194 0.27
247 185 0.26
248 173 0.24
249 7 0.01
250 27 0.04
251 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (247 bp):
ATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTA
GCCTTAAGTTATGCTGCAAATGATATGCCTTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGT
GACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTATAATC
GAACTCGAGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAA
Found at i:2981 original size:83 final size:87
Alignment explanation
Indices: 2862--3088 Score: 205
Period size: 95 Copynumber: 2.6 Consensus size: 87
2852 GGCTAGCTGA
* * * * *
2862 ATCCATAAAGCTGGGGTG-TTAACCATTTGCTCTAGAGGGACAACTCAA-TAT-GTA-AA-CACC
1 ATCCATAAAGCCGGGGAGTTTAACAAATTCCTCTAGAGGGACAACTCAAGTATAGTATAATCACC
* * *
2922 TTTATCAGGTTAGCTAAATCTT
66 TTTATCAGGCTAGCCAAATATT
* * * *
2944 ATCCATAAAGTCGGGGAGTTTAACCAATTACCT-TAGAGAGACAGCTCAAGCTTTAATGTATAGT
1 ATCCATAAAGCCGGGGAGTTTAACAAATT-CCTCTAGAG-G---G-ACAA-C-TCAA-GTATAGT
3008 ATAATCACCTTTATCAGGCTAGCCAAATATT
57 ATAATCACCTTTATCAGGCTAGCCAAATATT
* *
3039 ATCCATAAAGCCGGGGCGTTTAACAAATTGCTCTAGAGGGACAACTCAAG
1 ATCCATAAAGCCGGGGAGTTTAACAAATTCCTCTAGAGGGACAACTCAAG
3089 CTTTATTATA
Statistics
Matches: 114, Mismatches: 16, Indels: 25
0.74 0.10 0.16
Matches are distributed among these distances:
82 15 0.13
83 14 0.12
84 3 0.03
87 2 0.02
88 6 0.05
89 2 0.02
90 6 0.05
91 1 0.01
92 3 0.03
93 3 0.03
94 5 0.04
95 54 0.47
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (87 bp):
ATCCATAAAGCCGGGGAGTTTAACAAATTCCTCTAGAGGGACAACTCAAGTATAGTATAATCACC
TTTATCAGGCTAGCCAAATATT
Found at i:3087 original size:95 final size:95
Alignment explanation
Indices: 2918--3093 Score: 255
Period size: 95 Copynumber: 1.9 Consensus size: 95
2908 AATATGTAAA
* * * * *
2918 CACCTTTATCAGGTTAGCTAAATCTTATCCATAAAGTCGGGGAGTTTAACCAATTACCTTAGAGA
1 CACCTTTATCAGGCTAGCCAAATATTATCCATAAAGCCGGGGAGTTTAACAAATTACCTTAGAGA
*
2983 GACAGCTCAAGCTTTAATGTATAGTATAAT
66 GACAACTCAAGCTTTAATGTATAGTATAAT
* *
3013 CACCTTTATCAGGCTAGCCAAATATTATCCATAAAGCCGGGGCGTTTAACAAATT-GCTCTAGAG
1 CACCTTTATCAGGCTAGCCAAATATTATCCATAAAGCCGGGGAGTTTAACAAATTACCT-TAGAG
*
3077 GGACAACTCAAGCTTTA
65 AGACAACTCAAGCTTTA
3094 TTATATATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
94 2 0.03
95 69 0.97
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (95 bp):
CACCTTTATCAGGCTAGCCAAATATTATCCATAAAGCCGGGGAGTTTAACAAATTACCTTAGAGA
GACAACTCAAGCTTTAATGTATAGTATAAT
Found at i:7098 original size:5 final size:5
Alignment explanation
Indices: 7077--7363 Score: 480
Period size: 5 Copynumber: 58.2 Consensus size: 5
7067 TGAATAAAAT
*
7077 ATATA TTATA A-AGTA ATATA ATATA ATATA ATATA ATATA ATAT- A-ATA
1 ATATA ATATA ATA-TA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
7125 ATATA ATATA ATATA TATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA -ATATA ATATA ATATA ATATA ATATA ATATA ATATA
7176 ATATA ATATA ATATA ATATA ATATA ATAT- ATATA ATATA ATATA ATAT-
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
7224 ATATA ATATA ATATA ATATA ATATA ATATA ATAT- ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
*
7273 ATATA ATATA ATATA ATATA ATATA ATAT- ATAATA ATATA ATATA ATATG
1 ATATA ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA ATATA
7323 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA A
7364 AAGGACTAAA
Statistics
Matches: 268, Mismatches: 4, Indels: 20
0.92 0.01 0.07
Matches are distributed among these distances:
3 2 0.01
4 17 0.06
5 241 0.90
6 8 0.03
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:10451 original size:22 final size:21
Alignment explanation
Indices: 10426--10484 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
10416 CATATGAGGT
*
10426 AAAAAAATACTAATAATAATTA
1 AAAAAAATA-TAATAATAAATA
*
10448 AAAAACATGATAATAATAAATA
1 AAAAAAAT-ATAATAATAAATA
* *
10470 AATAAAATAAAATAA
1 AAAAAAATATAATAA
10485 GAATTAGGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 6 0.19
22 24 0.77
23 1 0.03
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (21 bp):
AAAAAAATATAATAATAAATA
Found at i:11588 original size:3 final size:3
Alignment explanation
Indices: 11580--11634 Score: 92
Period size: 3 Copynumber: 18.0 Consensus size: 3
11570 ATAAATAGGA
*
11580 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
11626 AAT AAT AAT
1 AAT AAT AAT
11635 CTATATAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 46 0.94
4 3 0.06
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:11826 original size:70 final size:66
Alignment explanation
Indices: 11740--12061 Score: 236
Period size: 65 Copynumber: 4.7 Consensus size: 66
11730 AACATATACA
** *
11740 ATATATATAACTTCAAAAATATTTTTTAAAAACTATATATTATATATATTTTCAAAATGTCTTAT
1 ATATATATATTTTC-AAAA-ATGTTTTAAAAACTATATA-TATATATATTTTCAAAATGT-TTAT
11805 ATAAT
62 ATAAT
* * *
11810 ATATAAATATTTTCAAAAATGTTTTCAAAACTATATAT-TATA-ATTTTCAAAATGTTT-TCAAA
1 ATATATATATTTTCAAAAATGTTTTAAAAACTATATATATATATATTTTCAAAATGTTTAT-ATA
11872 ACT
65 A-T
*
11875 ATATATTATAATTTTC-AAAATGTTTTCAAAACTATATACTATATATAATTTTCAAAATGTTTTA
1 ATATA-TAT-ATTTTCAAAAATGTTTTAAAAACTATATA-TATATAT-ATTTTCAAAATG-TTT-
*
11939 AAAACTATAT
60 -ATA-TA-AT
* * *
11949 ATTATATATATTTTC-AAAATGACTTTTAAAAACTATATAATATATAAATGTTTTCGAAA---CT
1 A-TATATATATTTTCAAAAATG--TTTTAAAAACTATAT-ATATAT--ATATTTTCAAAATGTTT
12010 ATAT-AT
60 ATATAAT
* * * *
12016 -TATATA-ATTTTTAAAAATGTTTTCAAAATTATACA-ATATATATTTT
1 ATATATATATTTTCAAAAATGTTTTAAAAACTATATATATATATATTTT
12062 TGAAAAACCG
Statistics
Matches: 212, Mismatches: 19, Indels: 53
0.75 0.07 0.19
Matches are distributed among these distances:
59 6 0.03
61 4 0.02
62 1 0.00
63 13 0.06
64 10 0.05
65 31 0.15
66 28 0.13
67 10 0.05
68 21 0.10
69 5 0.02
70 25 0.12
71 3 0.01
72 1 0.00
73 13 0.06
74 6 0.03
75 24 0.11
76 9 0.04
77 2 0.01
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (66 bp):
ATATATATATTTTCAAAAATGTTTTAAAAACTATATATATATATATTTTCAAAATGTTTATATAA
T
Found at i:11880 original size:101 final size:103
Alignment explanation
Indices: 11763--12093 Score: 301
Period size: 101 Copynumber: 3.2 Consensus size: 103
11753 CAAAAATATT
11763 TTTTAAAAACTATATATTATATATATTTTCAAAATGTCTTATATAATATATAAATATTTTCAAAA
1 TTTTAAAAACTATATATTATATATATTTTCAAAATGTCTTATATAATATATAAATATTTTCAAAA
11828 ATGTTTTCAAAACTATATAT-TATAATTTTCAAAATG-
66 ATGTTTTCAAAACTATATATATATAATTTTCAAAATGA
* * * *
11864 TTTTCAAAACTATATA-T-TATA-ATTTTCAAAATGTTTTCAAAACTATATACTATATATAATTT
1 TTTTAAAAACTATATATTATATATATTTTCAAAATGTCTT--ATA-TA-ATA-TATAAAT-ATTT
*
11926 TC-AAAATGTTTTAAAAACTATATATTATATATATTTTCAAAATGA
60 TCAAAAATGTTTTCAAAACTATATA-TATATA-ATTTTCAAAATGA
* * * *
11971 CTTTTAAAAACTATATAATATATAAATGTTTTCGAAA---C-TATATATTATAT-AAT-TTTT-A
1 -TTTTAAAAACTATAT-AT-TATATATATTTTCAAAATGTCTTATATAATATATAAATATTTTCA
* * * * * *
12029 AAAATGTTTTCAAAATTATACAATATATATTTTTGAAAAACCGT
63 AAAATGTTTTCAAAACTATA-TATATATAATTTT-CAAAA-TGA
*
12073 TTTTGAAAACTATATATTATA
1 TTTTAAAAACTATATATTATA
12094 CTTTGTCAAA
Statistics
Matches: 189, Mismatches: 21, Indels: 42
0.75 0.08 0.17
Matches are distributed among these distances:
98 15 0.08
99 8 0.04
100 9 0.05
101 63 0.33
102 5 0.03
103 29 0.15
104 10 0.05
105 6 0.03
106 14 0.07
107 2 0.01
108 14 0.07
109 2 0.01
111 1 0.01
112 3 0.02
113 8 0.04
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.45
Consensus pattern (103 bp):
TTTTAAAAACTATATATTATATATATTTTCAAAATGTCTTATATAATATATAAATATTTTCAAAA
ATGTTTTCAAAACTATATATATATAATTTTCAAAATGA
Found at i:11950 original size:171 final size:174
Alignment explanation
Indices: 11636--12088 Score: 451
Period size: 171 Copynumber: 2.6 Consensus size: 174
11626 AATAATAATC
* * ***
11636 TATATAAAATTTTTTCAAAAATATATAATATATAACTTTTCAAAATGCTTTTTTTTAACTATATA
1 TATA-AAAATGTTTTCAAAACTATAT-ATATATAACTTTTCAAAATG--TTTTCAAAACTATATA
*
11701 TTATACGTATTTTAAGAAACGTTTTTAAAAACATATACAATATATATAACTTCAAAAATATTTTT
62 TTATAC--ATTTTAAGAAACGTTTTTAAAAACATATAC-ATATATATAACTTC-AAAATATGTTT
* *
11766 TAAAAACTATATATTATATATATTTTCAAAATGTCTTAT-ATAA-TATATAAA
123 TAAAAACTATATATTATATATATTTTCAAAATGACTTATAAAAACTATAT-AA
11817 TATTTTCAAAAATGTTTTCAAAACTATATAT-TATAA-TTTTCAAAATGTTTTCAAAACTATATA
1 TA---T-AAAAATGTTTTCAAAACTATATATATATAACTTTTCAAAATGTTTTCAAAACTATATA
* * * *
11880 TTATA-ATTTTCA-AAATG-TTTTCAAAACTATATAC-TATATATAATTTTC-AAA-ATGTTTTA
62 TTATACATTTTAAGAAACGTTTTTAAAAAC-ATATACATATATATAA-CTTCAAAATATGTTTTA
*
11939 AAAACTATATATTATATATATTTTCAAAATGACTTTTAAAAACTATATAA
125 AAAACTATATATTATATATATTTTCAAAATGACTTATAAAAACTATATAA
* * * * * * *
11989 TATATAAATGTTTTCGAAACTATATATTATATAATTTTTAAAAATGTTTTCAAAATTATACAATA
1 TATAAAAATGTTTTCAAAACTATATA-TATATAACTTTTCAAAATGTTTTCAAAACTATATATTA
* *
12054 TATATTTTTGAA-AAACCGTTTTTGAAAACTATATA
65 TACA-TTTT-AAGAAA-CGTTTTTAAAAAC-ATATA
12089 TTATACTTTG
Statistics
Matches: 234, Mismatches: 22, Indels: 37
0.80 0.08 0.13
Matches are distributed among these distances:
168 21 0.09
169 2 0.01
170 5 0.02
171 70 0.30
172 11 0.05
173 18 0.08
174 16 0.07
175 11 0.05
176 21 0.09
179 18 0.08
181 13 0.06
182 5 0.02
183 2 0.01
184 20 0.09
185 1 0.00
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (174 bp):
TATAAAAATGTTTTCAAAACTATATATATATAACTTTTCAAAATGTTTTCAAAACTATATATTAT
ACATTTTAAGAAACGTTTTTAAAAACATATACATATATATAACTTCAAAATATGTTTTAAAAACT
ATATATTATATATATTTTCAAAATGACTTATAAAAACTATATAA
Found at i:11997 original size:29 final size:27
Alignment explanation
Indices: 11972--12032 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
11962 TCAAAATGAC
11972 TTTTAAAAACTATATAATATATAAATG
1 TTTTAAAAACTATATAATATATAAATG
** *
11999 TTTTCGAAACTATATATTATAT-AAT-
1 TTTTAAAAACTATATAATATATAAATG
12024 TTTTAAAAA
1 TTTTAAAAA
12033 TGTTTTCAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 7 0.24
26 3 0.10
27 19 0.66
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (27 bp):
TTTTAAAAACTATATAATATATAAATG
Found at i:12037 original size:36 final size:35
Alignment explanation
Indices: 11641--12093 Score: 307
Period size: 38 Copynumber: 12.8 Consensus size: 35
11631 TAATCTATAT
* * *
11641 AAAATTTTTTCAAAAATATATAATATATAACTTTTC
1 AAAATGTTTTCAAAACTATATATTATATAA-TTTTC
*** *
11677 AAAATGCTTTTTTTTAACTATATATTATACGT-ATTTTA
1 AAAATG--TTTTCAAAACTATATATTATA--TAATTTTC
* * * *
11715 AGAAACGTTTTTAAAAACATATACAATATATATAA-CTTC
1 A-AAATG-TTTTCAAAAC-TATA-TAT-TATATAATTTTC
* *
11754 AAAAATATTTTTTAAAAACTATATATTATATATATTTTC
1 --AAA-ATGTTTTCAAAACTATATATTATATA-ATTTTC
*
11793 AAAATGTCTTAT-ATAA-TATATA--A-AT-ATTTTC
1 AAAATGT-TT-TCAAAACTATATATTATATAATTTTC
11824 AAAAATGTTTTCAAAACTATATA-T-TATAATTTTC
1 -AAAATGTTTTCAAAACTATATATTATATAATTTTC
11858 AAAATGTTTTCAAAACTATATA-T-TATAATTTTC
1 AAAATGTTTTCAAAACTATATATTATATAATTTTC
11891 AAAATGTTTTCAAAACTATATACTATATATAATTTTC
1 AAAATGTTTTCAAAACTATATA-T-TATATAATTTTC
*
11928 AAAATGTTTTAAAAACTATATATTATATATATTTTC
1 AAAATGTTTTCAAAACTATATATTATATA-ATTTTC
*
11964 AAAATGACTTTTAAAAACTATATA--ATAT-A---T-
1 AAAATG--TTTTCAAAACTATATATTATATAATTTTC
* *
11994 -AAATGTTTTCGAAACTATATATTATATAATTTTTA
1 AAAATGTTTTCAAAACTATATATTATATAA-TTTTC
* * * * *
12029 AAAATGTTTTCAAAATTATACAATATATATTTTTGA
1 AAAATGTTTTCAAAACTATATATTATATAATTTT-C
* *
12065 AAAACCGTTTTTGAAAACTATATATTATA
1 AAAA-TG-TTTTCAAAACTATATATTATA
12094 CTTTGTCAAA
Statistics
Matches: 342, Mismatches: 34, Indels: 80
0.75 0.07 0.18
Matches are distributed among these distances:
27 14 0.04
29 9 0.03
30 2 0.01
31 12 0.04
32 13 0.04
33 59 0.17
34 9 0.03
35 10 0.03
36 61 0.18
37 46 0.13
38 66 0.19
39 19 0.06
40 16 0.05
41 6 0.02
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (35 bp):
AAAATGTTTTCAAAACTATATATTATATAATTTTC
Found at i:16773 original size:207 final size:206
Alignment explanation
Indices: 16378--16789 Score: 806
Period size: 207 Copynumber: 2.0 Consensus size: 206
16368 AATATAATTT
16378 CATTGTCTTACATTTTAGCAACCCTAATTTAAGTTTGACTAGATAAATGGGTGTTCTTGAATACA
1 CATTGTCTTACATTTTAGCAACCCTAATTTAAGTTTGACTAGATAAATGGGTGTTCTTGAATACA
16443 ATTAACATTCATGAGTTGCAAATAAAAAAAAAGGATTGCTAGTTTACGAAAGAATTGGCTTTAGA
66 ATTAACATTCATGAGTTGCAAATAAAAAAAAAGGATTGCTAGTTTACGAAAGAATTGGCTTTAGA
16508 TGACTGACATGATCCAGCAATGTTATCAGGATGTTAAATTTTCTTTGAGATCCTTTTCATTCTGT
131 TGACTGACATGATCCAGCAATGTTATCAGGATGTTAAATTTTCTTTGAGATCCTTTTCATTCTGT
16573 ATATTGTCTTA
196 ATATTGTCTTA
16584 CATTGTCTTACATTTTAGCAACCCTAATTTAAGTTTGACTAGATAAATGGGTGTTCTTGAATACA
1 CATTGTCTTACATTTTAGCAACCCTAATTTAAGTTTGACTAGATAAATGGGTGTTCTTGAATACA
16649 ATTAACATTCATGAGTTGCAAATAAAAAAAAAAGGATTGCTAGTTTACGAAAGAATTGGCTTTAG
66 ATTAACATTCATGAGTTGCAAAT-AAAAAAAAAGGATTGCTAGTTTACGAAAGAATTGGCTTTAG
*
16714 ATGACTGACATGATCCAGCAATGTTATCAGGATGTTAAATTTTCTTTGAGATTCTTTTCATTCTG
130 ATGACTGACATGATCCAGCAATGTTATCAGGATGTTAAATTTTCTTTGAGATCCTTTTCATTCTG
16779 TATATTGTCTT
195 TATATTGTCTT
16790 TATAGACTGT
Statistics
Matches: 204, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
206 88 0.43
207 116 0.57
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.38
Consensus pattern (206 bp):
CATTGTCTTACATTTTAGCAACCCTAATTTAAGTTTGACTAGATAAATGGGTGTTCTTGAATACA
ATTAACATTCATGAGTTGCAAATAAAAAAAAAGGATTGCTAGTTTACGAAAGAATTGGCTTTAGA
TGACTGACATGATCCAGCAATGTTATCAGGATGTTAAATTTTCTTTGAGATCCTTTTCATTCTGT
ATATTGTCTTA
Found at i:18838 original size:24 final size:22
Alignment explanation
Indices: 18805--18848 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
18795 CAGGCTAGTG
18805 TTTTTTTGTGTGTGCCCTTCGC
1 TTTTTTTGTGTGTGCCCTTCGC
18827 TTTTTTTGTGTGTGCCCTTCGC
1 TTTTTTTGTGTGTGCCCTTCGC
18849 CTGAGGCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.23, T:0.55
Consensus pattern (22 bp):
TTTTTTTGTGTGTGCCCTTCGC
Found at i:34401 original size:229 final size:228
Alignment explanation
Indices: 33996--34482 Score: 884
Period size: 229 Copynumber: 2.1 Consensus size: 228
33986 GTAAATTATC
* * *
33996 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
*
34061 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
34126 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
34191 AAACATAAATTACATAACTTTCAAAAAAGTATA
196 AAACATAAATTACATAACTTTCAAAAAAGTATA
*
34224 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
34289 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATT
* *
34354 TTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATT
130 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
*
34419 GAAACATAAATTACATAACTTTCAAAGAAGTATA
195 GAAACATAAATTACATAACTTTCAAAAAAGTATA
34453 TATCATTTTTATAAAAGTGTCCATACTTAT
1 TATCATTTTTATAAAAGTGTCCATACTTAT
34483 AAAAGTAGGT
Statistics
Matches: 249, Mismatches: 9, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
228 36 0.14
229 213 0.86
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (228 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTCAAAAAAGTATA
Found at i:34783 original size:20 final size:19
Alignment explanation
Indices: 34760--34806 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
34750 CGATATACCA
34760 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
34780 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
34800 GGTAAAA
1 GGTAAAA
34807 CGTTACCAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:34871 original size:180 final size:180
Alignment explanation
Indices: 34549--35019 Score: 683
Period size: 180 Copynumber: 2.6 Consensus size: 180
34539 GATCCAAATT
* * * *
34549 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATA-GAAATGAT
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTA-ACAAAATGAT
* * * * * *
34613 AAAACCGGTCAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTAATATAAGGATCGACACTTC
65 AAAACCGGTAAAACGATACCGGATATA-TTAAAGTGTCGATACTTTATATAAGGATCGACACTTC
* * *
34678 GTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
129 GTGAATTTAAAAGAGAAGCAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
*
34730 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
* * *
34795 AAACCGGTAAAACGTTACCAGATATATTAAAGTGTCGATACTTTATATAAGGATCGACACTTTGT
66 AAACCGGTAAAACGATACCGGATATATTAAAGTGTCGATACTTTATATAAGGATCGACACTTCGT
** *
34860 GAATTTAAAAGAGAAGCAGTTATAGCGCCTATAATGTGTCGATACTTTAA
131 GAATTTAAAAGAGAAGCAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
* * *
34910 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
* *
34975 AAATCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATT-AAAGTGTCGATACTTT
35020 CGTAAGTACG
Statistics
Matches: 261, Mismatches: 27, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
180 166 0.64
181 95 0.36
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (180 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
AAACCGGTAAAACGATACCGGATATATTAAAGTGTCGATACTTTATATAAGGATCGACACTTCGT
GAATTTAAAAGAGAAGCAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:34963 original size:20 final size:19
Alignment explanation
Indices: 34940--34986 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
34930 CGATATAACA
34940 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
* *
34960 GGTATCAAAATGATAAAATC
1 GGTA-AAAAATGATAAAACC
34980 GGTAAAA
1 GGTAAAA
34987 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.53, C:0.09, G:0.17, T:0.21
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:37249 original size:21 final size:21
Alignment explanation
Indices: 37222--37286 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
37212 AAGACAATTA
*
37222 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
* * *
37243 CGAGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
37264 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
37285 AG
1 AG
37287 GCATAAGGGG
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:37362 original size:33 final size:33
Alignment explanation
Indices: 37320--37385 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
37310 AAATAGATGG
*
37320 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
37353 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
37386 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:39198 original size:19 final size:19
Alignment explanation
Indices: 39174--39222 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
39164 AATGTAGGGT
39174 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
39193 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
39212 TATTTTTGTAT
1 TAATTTTGTAT
39223 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:40062 original size:198 final size:199
Alignment explanation
Indices: 39331--40882 Score: 2814
Period size: 198 Copynumber: 7.8 Consensus size: 199
39321 GGCAAATTTA
* * **
39331 CCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAATCAAAAGTATAA
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAA
* * *
39396 TGTAATATGTAATTTTTCAATCTAACCGGTACAAGTCTACCGGTTTTATGAGAGAATATGTCTAA
65 TGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAA
*
39461 ATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACATGG
130 ATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGG
39526 TGCAC
195 TGCAC
*
39531 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
39596 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
39661 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
39726 GCAC
196 GCAC
* * *
39730 CCATAAAGTTTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCAAAAGTATAA
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAA
* * *
39795 TGTAATATGTAATTTTTCAATCTAACCGGTACAAGTCTACCGGTTTTATGAGAGAATATGTCTAA
65 TGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAA
39860 ATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATGGAAAACAGGG
130 ATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGG
39924 TGCAC
195 TGCAC
*
39929 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
39994 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
40059 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGG-AAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
40123 GCAC
196 GCAC
40127 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
40192 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTATAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
*
40257 TAATGTGTCGACACTAATATAG-TTGTGTCGATATTTTTTTTCTAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
40321 GCAC
196 GCAC
40325 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
40390 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTATAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
40455 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTTCCAGAATGAATGGAAAACAGGG
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTTCCAGAATGAATGGAAAACAGGG
40520 TGCA-
195 TGCAC
40524 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
40589 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTATAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
40654 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
*
40719 GAAC
196 GCAC
40723 CCATAAAGTGTCGATCCATATA-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* *
40787 GTAATATGTAA-TTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
40851 TAATGTGTCGACACT-A-ATAGTTTGTGTCGATA
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATA
40883 CTAATTTAAA
Statistics
Matches: 1315, Mismatches: 31, Indels: 17
0.96 0.02 0.01
Matches are distributed among these distances:
195 16 0.01
196 1 0.00
197 96 0.07
198 525 0.40
199 487 0.37
200 190 0.14
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (199 bp):
CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
GCAC
Found at i:42377 original size:6 final size:6
Alignment explanation
Indices: 42347--42426 Score: 52
Period size: 6 Copynumber: 13.3 Consensus size: 6
42337 AGCGATCGCA
* * * * * **
42347 GAAGAT TAAGCT GACGAT GAAGAT GACGAT GAAGCT GGCGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* * * * *
42395 GATGAC GATGAT GATGAT GATGAT GAAGAT GA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA
42427 TGATCCAAAC
Statistics
Matches: 56, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 56 1.00
ACGTcount: A:0.38, C:0.07, G:0.34, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:42407 original size:3 final size:3
Alignment explanation
Indices: 42386--42430 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
42376 TGAAGCTGGC
* * *
42386 GAT GAA GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
42431 CCAAACAAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.38, C:0.02, G:0.33, T:0.27
Consensus pattern (3 bp):
GAT
Found at i:42430 original size:12 final size:12
Alignment explanation
Indices: 42358--42426 Score: 66
Period size: 12 Copynumber: 5.8 Consensus size: 12
42348 AAGATTAAGC
42358 TGACGATGAAGA
1 TGACGATGAAGA
*
42370 TGACGATGAAGC
1 TGACGATGAAGA
*
42382 TGGCGATGAAGA
1 TGACGATGAAGA
* * *
42394 TGATGACGATGA
1 TGACGATGAAGA
* *
42406 TGATGATGATGA
1 TGACGATGAAGA
*
42418 TGAAGATGA
1 TGACGATGA
42427 TGATCCAAAC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 48 1.00
ACGTcount: A:0.36, C:0.07, G:0.35, T:0.22
Consensus pattern (12 bp):
TGACGATGAAGA
Found at i:47323 original size:181 final size:182
Alignment explanation
Indices: 47015--47498 Score: 846
Period size: 183 Copynumber: 2.7 Consensus size: 182
47005 TTCACCATAT
* *
47015 TATAAATATACCGGTTTTTTGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATCTTGTG
1 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
* *
47080 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTGTTAAAAAGTGTCGACA-TT
66 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATT-TAAAAAAGTATCGACATTT
*
47144 ACACATCGGAACCCATAATTATAATGTAATAGATAA-TTTGTAATATAACCGG
130 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGG
47196 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
1 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
*
47261 TCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTATCGACATTT
66 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATAC-ATTTAAAAAAGTATCGACATTT
*
47326 ACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAACCGG
130 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGG
* *
47379 TATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTATAATATTGTG
1 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
47444 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGT
66 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTTAAAAAAGT
47499 GTCGGTAATT
Statistics
Matches: 289, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
181 118 0.41
182 39 0.13
183 131 0.45
184 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (182 bp):
TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTTAAAAAAGTATCGACATTTA
CACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGG
Found at i:50000 original size:25 final size:25
Alignment explanation
Indices: 49966--50030 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
49956 ATATCATTAA
49966 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
49991 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
50016 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
50031 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:50406 original size:23 final size:23
Alignment explanation
Indices: 50375--50447 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
50365 ATAGATAAAC
*
50375 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
50398 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
50421 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
50444 ATAT
1 ATAT
50448 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:50891 original size:18 final size:18
Alignment explanation
Indices: 50870--50906 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
50860 GTAATTGGAG
50870 TTTGAATTTGAATTTCAA
1 TTTGAATTTGAATTTCAA
*
50888 TTTGAGTTTGAATTTCAA
1 TTTGAATTTGAATTTCAA
50906 T
1 T
50907 ATATATTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (18 bp):
TTTGAATTTGAATTTCAA
Found at i:51208 original size:39 final size:39
Alignment explanation
Indices: 51165--51251 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
51155 TCCGATGCTC
*
51165 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
* *
51204 ATCAAAATTCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
51243 ATCAAAATC
1 ATCAAAATC
51252 TACAACTTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:51704 original size:23 final size:23
Alignment explanation
Indices: 51673--51745 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
51663 ATAGGTAAAC
* * *
51673 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGATT
* *
51696 ATATAATGTAATAGGTATTGTTT
1 ATATAATGTAATAGGTAGTGATT
51719 ATATAATGTAATAGGTAGTGATT
1 ATATAATGTAATAGGTAGTGATT
51742 ATAT
1 ATAT
51746 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGATT
Found at i:51934 original size:29 final size:29
Alignment explanation
Indices: 51891--51956 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 29
51881 GTTACGATAT
*
51891 ATATTATTATTAAAT-T-AAAAATTCTAAATA
1 ATATT-TTATAAAATATCAAAAA-TC-AAATA
51921 ATATTTTATAAAATATCAAAAATCAAATA
1 ATATTTTATAAAATATCAAAAATCAAATA
*
51950 ATTTTTT
1 ATATTTT
51957 GTGCAAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 19 0.59
30 8 0.25
31 5 0.16
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (29 bp):
ATATTTTATAAAATATCAAAAATCAAATA
Found at i:58818 original size:14 final size:15
Alignment explanation
Indices: 58795--58827 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
58785 CGTAACTCAA
58795 AAAAATAATAATATT
1 AAAAATAATAATATT
*
58810 AAAAA-AATAATTTT
1 AAAAATAATAATATT
58824 AAAA
1 AAAA
58828 TTATATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATATT
Found at i:64130 original size:2 final size:2
Alignment explanation
Indices: 64123--64209 Score: 174
Period size: 2 Copynumber: 43.5 Consensus size: 2
64113 AATTAGAAGA
64123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64207 AT A
1 AT A
64210 CACACTCTAG
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 85 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:68613 original size:42 final size:42
Alignment explanation
Indices: 68565--68653 Score: 169
Period size: 42 Copynumber: 2.1 Consensus size: 42
68555 ATAATAAAGT
68565 AATATATTATCGATGAATTTTTATAGAAATAATTTTTATTTA
1 AATATATTATCGATGAATTTTTATAGAAATAATTTTTATTTA
*
68607 AATATATTATCGATGAATTTTTATATAAATAATTTTTATTTA
1 AATATATTATCGATGAATTTTTATAGAAATAATTTTTATTTA
68649 AATAT
1 AATAT
68654 TTAGAATTCA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.51
Consensus pattern (42 bp):
AATATATTATCGATGAATTTTTATAGAAATAATTTTTATTTA
Found at i:68650 original size:15 final size:15
Alignment explanation
Indices: 68580--68652 Score: 55
Period size: 15 Copynumber: 5.1 Consensus size: 15
68570 ATTATCGATG
*
68580 AATTTTTATAGAAAT
1 AATTTTTATATAAAT
*
68595 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
* **
68610 -A--TAT-TATCGAT
1 AATTTTTATATAAAT
68621 GAATTTTTATATAAAT
1 -AATTTTTATATAAAT
*
68637 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
68652 A
1 A
68653 TTTAGAATTC
Statistics
Matches: 43, Mismatches: 10, Indels: 10
0.68 0.16 0.16
Matches are distributed among these distances:
11 4 0.09
12 2 0.05
13 1 0.02
14 1 0.02
15 30 0.70
16 5 0.12
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:86414 original size:16 final size:16
Alignment explanation
Indices: 86393--86424 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
86383 CTATTATCTT
86393 GGGTGTCCCTTCTTAG
1 GGGTGTCCCTTCTTAG
86409 GGGTGTCCCTTCTTAG
1 GGGTGTCCCTTCTTAG
86425 CCACTGGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.31, T:0.38
Consensus pattern (16 bp):
GGGTGTCCCTTCTTAG
Found at i:95277 original size:2 final size:2
Alignment explanation
Indices: 95270--95295 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
95260 TGAAATTCTA
95270 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
95296 GTATTGTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103330 original size:16 final size:15
Alignment explanation
Indices: 103297--103327 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
103287 ATTGGAGGAG
103297 TAATGCTTATTTTTT
1 TAATGCTTATTTTTT
*
103312 TAATTCTTATTTTTT
1 TAATGCTTATTTTTT
103327 T
1 T
103328 TAAATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.71
Consensus pattern (15 bp):
TAATGCTTATTTTTT
Found at i:104575 original size:2 final size:2
Alignment explanation
Indices: 104568--104627 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
104558 TTCATAAATA
104568 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104610 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
104628 GGTTTGTTAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105116 original size:24 final size:24
Alignment explanation
Indices: 105089--105138 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
105079 TTGACTATGC
*
105089 TCTTTTATTTTGCTTCCTTCATCA
1 TCTTTTATTTTGCTTCCTCCATCA
* *
105113 TCTTTTGTTTTGCTTTCTCCATCA
1 TCTTTTATTTTGCTTCCTCCATCA
105137 TC
1 TC
105139 AAACTTGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.26, G:0.06, T:0.58
Consensus pattern (24 bp):
TCTTTTATTTTGCTTCCTCCATCA
Found at i:113538 original size:13 final size:13
Alignment explanation
Indices: 113520--113544 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
113510 ACGCTCATAC
113520 ATAATTATATATG
1 ATAATTATATATG
113533 ATAATTATATAT
1 ATAATTATATAT
113545 AAGCTTTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
ATAATTATATATG
Found at i:115404 original size:28 final size:26
Alignment explanation
Indices: 115373--115425 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
115363 TAATTTTTTT
115373 AATAAAAAATTAAATAATTTTTAATTTA
1 AATAAAAAATT-AA-AATTTTTAATTTA
* *
115401 AATATAAAATTGAAATTTTTAATTT
1 AATAAAAAATTAAAATTTTTAATTT
115426 TTAAAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 12 0.52
27 1 0.04
28 10 0.43
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (26 bp):
AATAAAAAATTAAAATTTTTAATTTA
Found at i:120900 original size:18 final size:17
Alignment explanation
Indices: 120877--120910 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
120867 CAGTCTGTTT
120877 TATTTTAATGATTTTATA
1 TATTTTAAT-ATTTTATA
*
120895 TATTTTGATATTTTAT
1 TATTTTAATATTTTAT
120911 TAATTATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (17 bp):
TATTTTAATATTTTATA
Done.