Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006817.1 Hibiscus syriacus cultivar Beakdansim tig00017325_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62574

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4720--4751
12
2.7
12
95
0
55
68
9
3
18
1.30
5690--5743
25
2.2
25
78
18
60
51
0
3
44
1.19
5687--5742
24
2.4
24
80
16
64
53
0
3
42
1.18
5705--5760
24
2.3
24
78
3
58
51
1
1
44
1.22
12346--12418
24
3.0
24
86
6
85
36
17
28
16
1.92
12837--13205
184
2.0
182
92
3
607
32
14
15
36
1.89
15024--15071
16
3.1
14
83
16
60
60
0
0
39
0.97
15024--15074
18
3.2
16
86
10
61
60
0
0
39
0.97
15547--15604
21
2.8
21
70
19
57
34
18
20
25
1.96
22095--22136
7
6.1
7
94
5
59
45
4
0
50
1.23
22099--22136
20
1.9
20
88
0
58
42
5
0
52
1.24
22851--22901
25
2.0
25
88
0
75
41
11
11
35
1.78
26812--26854
19
2.3
19
84
15
54
62
0
0
37
0.95
30001--30119
46
2.6
46
82
1
141
31
17
21
30
1.96
30086--30276
25
8.2
25
62
23
103
33
19
24
23
1.97
30046--30186
71
2.0
71
92
0
237
32
19
21
26
1.97
30111--30287
45
3.9
45
98
0
336
32
19
24
22
1.97
30001--30231
116
2.0
117
87
0
338
32
19
22
25
1.97
30947--31003
22
2.6
22
81
10
71
36
12
17
33
1.87
32291--32455
75
2.3
72
84
5
208
29
20
15
34
1.93
40217--40274
28
2.1
28
90
6
91
60
0
5
34
1.19
40215--40271
29
2.1
26
81
15
71
61
0
5
33
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40223--40285
28
2.3
29
84
10
80
60
0
6
33
1.22
40222--40298
29
2.7
29
80
8
86
58
0
6
35
1.24
40677--40767
48
1.9
48
82
6
114
43
5
3
47
1.42
41062--41092
3
10.3
3
92
0
53
64
0
3
32
1.09
42440--42501
27
2.3
26
83
10
72
48
0
1
50
1.10
47256--47480
111
2.0
111
98
0
432
34
3
8
54
1.46
47289--47524
111
2.1
111
81
6
264
36
6
8
49
1.58
48166--48311
21
7.1
21
69
7
111
19
19
24
36
1.94
48170--48311
41
3.5
41
96
0
257
19
19
23
36
1.95
48195--48305
20
5.4
20
70
8
98
16
21
24
37
1.93
48170--48336
82
2.0
83
91
3
275
19
20
23
37
1.94
48336--48376
19
2.2
19
86
0
55
39
9
21
29
1.86
48449--48477
6
4.8
6
100
0
58
34
51
13
0
1.42
48482--48522
5
8.4
5
91
2
66
39
19
41
0
1.52
49114--49164
22
2.3
22
100
0
102
37
27
17
17
1.93
49155--49415
41
6.4
41
98
0
495
36
24
20
18
1.95
51035--51098
21
2.8
23
81
9
60
28
15
25
31
1.96
51203--51248
24
1.9
24
90
0
74
56
2
2
39
1.24
51599--51664
25
2.6
25
85
0
87
33
9
10
46
1.70
52722--52891
85
2.0
85
98
0
331
32
7
8
51
1.60
56627--56693
32
2.1
33
88
2
100
14
8
41
34
1.78
59769--59814
2
23.5
2
95
4
85
50
0
0
50
1.00

Tables:   1

The End!