Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006819.1 Hibiscus syriacus cultivar Beakdansim tig00017327_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60439

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4335--4379
23
2.0
23
86
0
63
20
26
26
26
1.99
5260--5317
24
2.5
24
83
5
75
29
25
18
25
1.98
5303--5360
30
1.9
30
86
6
82
32
20
18
27
1.97
12663--12708
22
2.0
23
83
4
58
63
10
4
21
1.44
13072--13106
16
2.2
16
89
0
52
51
2
0
45
1.16
15061--15135
24
3.2
23
72
9
71
36
1
2
60
1.20
15289--15328
21
1.9
21
85
10
55
45
2
0
52
1.14
25318--25452
67
2.0
67
97
0
252
31
7
11
49
1.67
26882--26912
16
1.9
16
100
0
62
54
0
0
45
0.99
29451--29481
15
2.1
15
93
0
53
32
3
0
64
1.09
32275--32334
25
2.4
25
83
8
68
41
8
3
46
1.50
37336--37760
106
4.0
106
91
0
697
21
19
24
34
1.96
38392--38476
37
2.3
37
81
4
91
43
15
15
25
1.86
38558--38639
36
2.2
38
86
6
123
35
14
23
26
1.93
39070--39105
18
2.0
18
94
0
63
41
33
8
16
1.78
40192--40222
16
2.0
16
93
6
55
0
16
6
77
0.97
40170--40222
26
2.0
26
96
0
97
0
13
7
79
0.93
40178--40233
26
2.2
26
86
0
76
5
14
8
71
1.29
43111--43150
19
2.1
19
100
0
80
25
45
10
20
1.81
44970--45013
2
22.5
2
95
4
81
52
0
0
47
1.00
44968--45024
18
3.3
18
87
4
73
56
1
0
42
1.10
45087--45143
24
2.4
23
75
16
55
56
3
7
33
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46219--46260
17
2.5
17
80
7
50
42
0
4
52
1.22
48146--48195
18
2.8
18
79
8
50
22
4
18
56
1.58
59311--59335
13
1.9
13
100
0
50
72
0
0
28
0.86

Tables:   1

The End!