genome.fa.s682.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000682.1 Hibiscus syriacus cultivar Beakdansim tig00001330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59056

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2610--2666	26	2.2	26	84	6	71	10	8	17	63	1.51
2614--2670	16	3.7	16	86	4	73	10	8	17	63	1.51
2673--2751	31	2.6	31	93	2	133	45	16	12	25	1.82
4112--4140	15	2.0	15	93	6	51	44	0	6	48	1.29
13696--13801	19	4.6	25	67	26	83	36	4	0	58	1.19
13703--13785	14	5.7	15	70	16	57	34	4	0	60	1.18
13688--13801	45	2.5	45	95	1	201	37	4	0	57	1.18
13723--13797	26	3.2	26	67	25	83	37	6	0	56	1.26
13720--13791	23	3.2	23	67	25	71	34	6	0	58	1.25
13732--13801	22	3.1	22	67	25	65	37	5	0	57	1.23
13688--13815	45	2.8	44	90	7	193	35	4	0	58	1.24
14261--14290	14	2.1	14	93	0	51	50	6	0	43	1.28
14368--14488	14	8.6	14	80	3	91	19	2	31	47	1.62
14368--14488	21	5.8	20	80	5	100	19	2	31	47	1.62
14371--14488	7	16.9	7	71	13	73	18	2	31	47	1.62
14387--14476	35	2.6	35	82	3	110	18	3	32	45	1.66
14768--14804	19	2.1	18	85	14	51	62	16	5	16	1.51
17082--17186	11	9.2	11	69	8	57	29	20	21	27	1.98
17065--17138	23	3.2	23	67	7	60	25	17	27	29	1.97
17125--17187	23	2.7	23	97	0	117	31	22	20	25	1.98
18433--18458	4	6.5	4	100	0	52	53	0	0	46	1.00
18779--18808	16	1.9	15	93	6	51	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19278--19311	2	17.0	2	100	0	68	50	0	0	50	1.00
21226--21269	23	2.0	23	90	4	72	18	15	18	47	1.83
21259--21458	90	2.2	91	90	0	321	29	6	8	56	1.52
21449--21488	20	2.0	20	85	0	53	12	10	17	60	1.59
22313--22410	31	3.2	30	71	11	74	44	14	5	35	1.67
22585--22630	2	23.0	2	100	0	92	50	0	0	50	1.00
24946--25052	24	4.5	24	72	0	88	47	15	13	23	1.81
24946--25054	48	2.3	48	75	0	110	47	15	13	22	1.81
26178--26213	18	2.0	18	88	0	54	30	16	0	52	1.44
27521--27552	7	4.4	7	92	7	55	25	28	34	12	1.92
27522--27599	8	10.5	8	71	23	64	17	24	42	15	1.88
27522--27568	15	3.3	15	91	5	71	21	25	38	14	1.92
27550--27626	18	4.6	18	79	15	101	11	20	49	18	1.78
27544--27622	31	2.5	31	95	0	140	13	21	46	17	1.83
27529--27601	13	5.1	13	80	18	74	16	23	45	15	1.85
30321--30355	18	1.9	18	100	0	70	40	5	11	42	1.65
33932--33958	14	1.9	14	100	0	54	14	22	11	51	1.73
36364--36389	3	8.7	3	100	0	52	34	0	0	65	0.93
38784--38854	17	4.2	17	71	18	60	73	1	2	22	1.05
38768--38849	31	2.7	31	76	12	82	70	1	4	23	1.13
38784--38854	34	2.1	33	82	7	81	73	1	2	22	1.05
38824--38903	37	2.2	38	80	8	94	72	3	8	15	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39707--39733	8	3.4	8	100	0	54	0	40	11	48	1.39
40783--41132	106	3.3	106	95	0	612	22	18	25	33	1.96
42897--42948	26	2.0	25	82	10	61	59	3	17	19	1.52
44647--44721	37	2.1	36	82	7	89	76	1	2	20	0.99
44643--44722	17	4.6	16	70	18	54	75	1	2	21	1.00
49474--49558	42	2.0	42	95	0	152	15	25	21	37	1.92
49553--50506	117	8.1	116	77	7	766	37	22	16	23	1.93
49553--50534	234	4.2	237	77	6	901	37	22	17	22	1.93
49553--50506	357	2.7	349	78	10	977	37	22	16	23	1.93

Tables:   1

The End!