genome.fa.s6820.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006820.1 Hibiscus syriacus cultivar Beakdansim tig00017331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103749

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7299--7346	21	2.3	21	85	0	60	27	14	20	37	1.92
7402--7476	28	2.7	28	95	0	141	20	14	33	32	1.92
9648--9728	21	3.9	21	70	12	67	46	25	0	27	1.53
9686--9736	21	2.5	21	78	6	61	45	23	0	31	1.53
14437--14467	2	15.5	2	100	0	62	48	0	0	51	1.00
22934--22979	23	2.0	23	86	0	65	34	26	21	17	1.95
25280--25322	21	2.0	21	81	0	50	27	13	23	34	1.93
25340--25381	22	2.0	22	86	13	61	19	28	28	23	1.98
26168--26224	21	2.7	21	94	5	98	22	19	29	28	1.98
43402--43671	37	7.6	36	76	13	204	43	2	8	45	1.45
43402--43671	35	7.6	35	75	13	187	43	2	8	45	1.45
43366--43671	108	2.8	109	77	14	294	43	2	8	45	1.49
43648--43708	17	3.4	17	73	13	59	45	4	4	44	1.46
43724--43793	5	15.2	5	75	19	55	32	0	1	65	1.01
43749--43810	6	9.8	6	73	16	54	25	1	0	72	0.94
46272--46309	20	1.9	20	88	0	58	21	26	10	42	1.85
46830--46964	70	1.9	71	83	11	177	30	5	38	25	1.79
47049--47081	12	2.6	13	90	4	50	48	0	0	51	1.00
47175--47209	15	2.3	15	90	0	52	40	5	5	48	1.51
48958--49060	29	3.5	29	75	6	100	43	10	5	39	1.63
48978--49070	29	3.1	29	75	6	89	47	9	4	38	1.56
49821--49983	87	1.9	87	93	2	283	39	8	15	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50005--50702	201	3.5	200	87	2	906	30	15	14	39	1.88
53430--53477	19	2.5	19	93	6	80	50	12	6	31	1.65
55613--55667	24	2.4	23	80	11	69	49	7	0	43	1.30
57501--58241	182	4.1	182	89	1	1090	28	15	14	42	1.86
59291--59344	21	2.6	21	84	0	63	25	24	29	20	1.99
60033--60441	202	2.0	204	92	1	680	30	14	16	38	1.88
70666--70699	12	2.9	12	91	4	52	73	0	0	26	0.83
70766--70805	12	3.6	12	74	19	50	27	2	0	70	1.01
70829--70873	21	2.1	21	95	0	81	60	0	0	40	0.97
72658--72727	32	2.2	32	89	5	106	30	34	0	35	1.58
74442--74486	21	2.1	21	87	0	63	31	28	24	15	1.96
75508--75591	2	42.0	2	100	0	168	50	0	0	50	1.00
76234--76322	22	4.0	22	98	1	169	17	26	28	26	1.98
79481--79525	21	2.1	21	87	0	63	31	28	24	15	1.96
81199--81265	22	3.0	22	97	2	125	17	26	28	26	1.98
83895--83931	10	3.6	10	92	3	56	32	2	0	64	1.07
87747--87823	34	2.4	33	85	8	97	37	0	1	61	1.05
87963--88016	17	3.2	17	72	0	54	31	0	3	64	1.11
89596--89647	21	2.5	21	84	12	79	17	34	26	21	1.95
90172--90266	34	2.8	33	83	3	109	54	3	3	38	1.32
90172--90266	33	2.8	34	83	3	111	54	3	3	38	1.32
90541--90611	32	2.2	32	82	7	81	33	14	2	49	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90666--91294	128	4.9	128	93	0	1062	32	19	24	23	1.98
91365--91405	8	5.2	8	82	5	57	36	29	0	34	1.58
95585--95714	62	2.0	63	94	5	226	46	15	13	24	1.82
97310--97446	35	3.9	35	72	5	98	29	16	20	33	1.95
99145--99221	25	2.9	26	75	14	70	59	0	0	40	0.97
99133--99225	34	2.8	33	86	6	134	58	0	0	41	0.98
99141--99223	32	2.6	31	83	14	114	57	0	0	42	0.98
101652--101688	2	19.0	2	84	15	51	45	0	2	51	1.15
101654--101688	7	4.9	7	89	3	52	45	0	2	51	1.16
101652--101690	14	2.9	14	92	7	64	43	0	5	51	1.24
101717--101822	37	2.9	35	76	17	110	47	2	5	44	1.41
101736--101951	35	6.3	32	75	15	184	44	4	7	43	1.53
101753--101952	103	1.9	102	81	7	226	44	4	7	44	1.51
101973--102007	16	2.1	17	89	5	54	17	2	0	80	0.84
103061--103098	17	2.2	18	85	4	51	13	13	0	73	1.09

Tables:   1

The End!