genome.fa.s6821.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006821.1 Hibiscus syriacus cultivar Beakdansim tig00017332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135836

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5570--5642	37	2.0	37	97	0	137	49	9	5	35	1.59
6832--6857	2	13.0	2	100	0	52	50	0	0	50	1.00
19100--19168	26	2.7	26	100	0	138	57	2	34	4	1.33
21110--21154	2	22.5	2	100	0	90	51	0	0	48	1.00
23215--23247	3	11.0	3	100	0	66	66	0	0	33	0.92
30044--30105	31	2.0	32	87	3	90	37	0	3	59	1.13
30512--30550	19	2.1	19	95	0	69	15	41	7	35	1.76
32635--32662	3	9.3	3	100	0	56	32	0	0	67	0.91
32658--32729	37	2.1	36	84	10	96	45	1	1	51	1.18
34256--34307	21	2.5	21	81	3	61	38	19	25	17	1.93
34296--34430	20	6.7	20	78	7	112	34	22	17	25	1.96
34293--34430	61	2.3	61	84	2	188	35	22	17	24	1.95
34598--34641	22	2.0	22	90	0	70	22	43	15	18	1.88
34904--34962	20	3.0	20	87	0	73	16	18	22	42	1.89
35099--35153	25	2.2	24	78	15	58	20	9	18	52	1.71
36282--36326	18	2.5	18	88	0	72	26	44	15	13	1.83
36807--36852	20	2.3	20	84	0	56	36	23	21	17	1.94
36818--36862	20	2.3	20	84	3	65	37	20	24	17	1.93
36846--36942	19	5.6	19	69	22	88	45	19	20	14	1.85
36846--36937	33	2.8	33	96	0	166	46	19	19	14	1.83
36862--36918	14	3.7	14	72	20	51	50	21	15	12	1.76
36956--37046	33	2.8	33	91	1	148	14	17	21	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36932--37088	19	8.7	19	72	17	88	15	19	22	42	1.88
37031--37086	20	2.8	19	84	7	76	17	25	21	35	1.95
37421--37474	19	2.8	19	88	0	90	48	16	22	12	1.80
37464--37598	40	3.8	34	77	13	103	17	21	20	40	1.91
37507--37582	20	3.8	20	72	6	73	17	19	21	42	1.90
37796--37845	20	2.5	20	80	0	73	22	18	22	38	1.94
38688--38742	24	2.3	24	93	0	92	23	14	20	41	1.89
41231--41328	19	5.7	19	69	22	90	43	19	24	12	1.85
41231--41324	33	2.8	33	98	0	179	43	19	24	12	1.85
41324--41365	19	2.2	19	86	0	57	19	19	19	42	1.89
41333--41399	19	3.8	19	73	18	72	13	22	17	46	1.83
41336--41399	33	1.9	33	93	0	110	12	23	18	45	1.84
42926--43005	42	1.9	42	84	0	106	22	17	38	21	1.93
43227--43411	91	2.0	90	88	6	273	47	17	12	22	1.81
45100--45188	14	5.6	14	68	23	52	42	22	23	11	1.85
45079--45205	33	3.8	33	93	1	191	44	22	22	11	1.85
45206--45272	19	3.5	19	81	2	80	11	16	23	47	1.80
45792--45863	20	3.5	20	86	5	83	22	20	20	36	1.96
45853--46028	21	8.5	21	68	12	69	32	18	20	27	1.96
45789--46001	41	5.2	40	68	11	119	30	18	19	31	1.96
46820--46898	3	26.3	3	100	0	158	0	67	0	32	0.91
55763--55803	2	20.5	2	89	0	64	46	0	48	4	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68360--68478	44	2.5	48	80	10	129	40	4	1	53	1.30
68832--68910	31	2.5	31	87	0	113	36	8	18	35	1.83
70169--70206	14	2.7	14	95	0	67	7	44	0	47	1.32
70861--70953	20	4.7	20	97	0	168	29	15	30	25	1.95
73861--73931	34	2.1	34	100	0	142	49	11	2	36	1.53
76086--76149	26	2.5	26	100	0	128	23	28	17	31	1.97
81603--81880	116	2.3	117	87	6	398	37	19	13	29	1.90
83732--83925	103	1.9	103	97	0	370	20	22	22	34	1.97
84493--84543	3	16.7	3	83	4	66	29	1	1	66	1.13
88360--88421	32	2.0	32	96	3	117	14	14	9	61	1.57
90850--90927	26	3.2	25	66	22	67	24	21	10	43	1.83
91517--91563	18	2.6	17	75	21	51	68	14	12	4	1.36
91542--91590	13	3.9	12	82	15	55	71	12	12	4	1.28
92778--92807	4	7.5	4	100	0	60	50	23	0	26	1.50
93274--93511	105	2.3	101	82	5	264	31	18	12	38	1.87
93458--93538	36	2.3	36	80	6	94	32	20	9	37	1.86
93473--93576	36	3.0	36	81	4	124	32	20	11	35	1.88
93818--94009	28	6.8	28	89	3	260	28	11	15	45	1.80
93818--94009	57	3.4	57	86	2	264	28	11	15	45	1.80
94020--94123	52	2.0	53	94	3	183	32	13	17	36	1.89
94110--94166	27	2.1	27	90	6	89	31	7	17	43	1.76
94155--94275	37	3.5	37	68	15	112	33	10	10	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94137--94285	67	2.2	68	92	2	255	34	10	12	42	1.76
94517--94639	63	2.0	62	88	1	183	30	15	11	43	1.82
94787--94861	36	2.1	36	82	9	91	25	17	12	45	1.82
94780--94899	63	1.9	63	85	11	165	29	17	11	41	1.85
94979--95394	46	9.7	45	72	15	249	25	31	18	25	1.98
95033--95394	40	8.6	40	70	18	229	25	31	18	24	1.97
94987--95374	128	3.0	128	96	0	722	24	31	18	24	1.97
95557--95607	3	16.7	3	83	4	66	29	1	1	66	1.13
99007--99145	3	43.7	3	74	17	95	33	4	2	59	1.32
99034--99076	17	2.6	16	82	13	52	27	6	6	58	1.50
98991--99144	45	3.4	44	72	22	115	33	5	3	58	1.36
108315--108348	15	2.2	16	89	5	52	38	0	5	55	1.24
110857--110911	28	2.0	27	82	10	67	60	0	10	29	1.31
122044--122079	17	2.1	17	90	10	56	27	19	16	36	1.93
124808--124885	31	2.5	32	73	8	90	55	11	7	25	1.62
125058--125146	32	2.9	30	77	11	90	56	6	5	31	1.49
127408--127480	35	2.1	35	100	0	146	20	12	35	31	1.90
128911--129017	52	2.1	52	98	0	205	36	11	9	42	1.73
129927--129968	20	2.2	19	86	4	57	54	0	7	38	1.28
131741--131766	12	2.2	12	100	0	52	23	23	34	19	1.96

Tables:   1

The End!