genome.fa.s6822.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006822.1 Hibiscus syriacus cultivar Beakdansim tig00017333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111091

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3198--3284	31	2.8	31	78	1	84	28	14	8	48	1.73
3467--3519	16	3.2	17	72	17	58	20	28	13	37	1.90
5384--5421	20	1.9	20	94	0	67	34	18	18	28	1.95
6748--6817	21	3.4	21	70	21	76	48	4	18	28	1.67
6759--6821	17	3.4	17	69	23	54	49	3	19	28	1.63
6744--6823	40	2.0	40	100	0	160	47	5	17	30	1.69
7863--7947	42	2.0	42	95	0	152	34	9	2	54	1.46
19764--20306	251	2.2	250	90	2	867	42	22	11	24	1.86
27626--27672	24	2.0	24	83	8	60	57	12	2	27	1.47
30972--31015	20	2.2	20	84	4	63	65	0	15	18	1.27
37184--37217	17	2.1	16	88	5	50	76	0	8	14	1.01
37692--37738	24	2.0	24	83	8	60	57	12	2	27	1.47
39384--39423	21	1.9	21	84	0	53	40	12	2	45	1.56
39525--39567	23	1.9	23	90	4	70	55	0	2	41	1.12
42316--42374	13	4.4	14	74	16	54	49	0	0	50	1.00
43606--43664	31	1.9	31	86	3	84	54	13	10	22	1.69
51818--51872	20	2.8	20	78	15	60	67	5	3	23	1.28
51817--51873	30	1.9	30	88	0	87	66	5	3	24	1.28
51958--52618	333	2.0	326	89	5	1019	44	7	5	42	1.54
54655--54721	21	3.2	21	71	22	61	29	2	2	64	1.23
56684--56710	13	2.1	13	100	0	54	40	22	14	22	1.90
57722--57777	14	4.1	14	73	21	57	16	16	16	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57723--57778	24	2.2	26	87	9	89	17	14	16	51	1.76
60287--60479	41	4.8	40	82	5	210	36	25	18	19	1.94
60287--60479	20	9.5	20	78	7	210	36	25	18	19	1.94
60265--60479	101	2.1	102	89	4	328	35	26	17	20	1.95
60537--60579	20	2.2	20	100	0	86	25	18	16	39	1.91
60567--60641	21	3.6	21	92	0	123	22	22	25	29	1.99
61110--61182	23	3.2	23	94	0	128	34	5	21	38	1.77
74087--74129	22	2.0	22	95	0	77	51	27	13	6	1.67
79114--79173	19	3.1	19	85	4	84	48	6	21	23	1.74
87438--87554	51	2.2	52	88	5	166	39	0	8	51	1.39
88637--88717	37	2.2	37	78	8	85	50	3	1	44	1.27
89343--89374	14	2.3	14	94	0	55	25	9	15	50	1.74
91751--91818	32	2.1	32	94	0	118	32	13	13	41	1.83
99625--99695	26	2.7	26	84	4	81	56	1	4	38	1.28
99654--99742	24	3.5	25	75	21	78	55	0	5	39	1.24
99676--99749	25	3.0	24	75	19	73	51	0	8	40	1.32
99676--99744	24	2.8	26	78	14	83	53	0	7	39	1.29
100442--100476	18	2.0	18	88	5	54	48	14	0	37	1.44
100931--100997	35	1.9	35	84	0	89	34	25	14	25	1.94
100977--101066	21	4.3	21	69	0	54	40	22	11	26	1.87
102427--102454	2	14.0	2	100	0	56	50	0	0	50	1.00
103037--103078	20	2.0	20	86	13	59	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106528--106573	18	2.6	18	93	3	76	50	8	19	21	1.75
107658--107718	31	2.0	31	90	0	95	37	18	19	24	1.94
109866--109921	21	2.7	20	88	8	76	23	30	21	25	1.99
109862--109921	22	2.8	22	82	12	79	23	30	21	25	1.99
110440--110523	31	2.7	30	89	5	132	35	17	19	27	1.94

Tables:   1

The End!