Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006825.1 Hibiscus syriacus cultivar Beakdansim tig00017346_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64295

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
758--785
6
4.7
6
100
0
56
14
0
67
17
1.22
6673--6712
17
2.3
19
79
16
50
22
0
2
75
0.93
8998--9056
21
2.8
21
73
14
59
40
0
0
59
0.97
10407--10433
2
13.5
2
100
0
54
48
0
0
51
1.00
10470--10510
22
1.9
21
85
5
55
34
14
0
51
1.43
14717--14956
81
3.0
80
87
3
311
32
23
10
32
1.89
15111--15384
55
4.9
55
93
3
460
35
17
11
35
1.87
15111--15384
112
2.5
110
94
1
476
35
17
11
35
1.87
15725--15781
21
2.7
21
97
2
105
22
15
19
42
1.89
16931--16963
17
1.9
17
93
0
57
33
0
0
66
0.92
18376--18422
25
1.9
24
91
4
76
34
0
0
65
0.93
23193--23583
185
2.1
185
93
1
671
45
8
3
43
1.50
27892--27963
3
24.0
3
100
0
144
33
0
0
66
0.92
31576--31602
3
9.0
3
100
0
54
33
0
0
66
0.92
38403--38658
96
2.7
94
83
7
313
33
16
16
33
1.92
39729--39844
36
3.2
36
90
1
178
31
18
11
38
1.86
39901--39947
21
2.2
22
92
3
78
25
17
12
44
1.84
39798--40024
125
1.8
125
88
4
352
26
19
13
40
1.89
39944--40004
30
2.1
28
88
11
88
29
16
13
40
1.86
39919--40064
67
2.1
67
86
5
195
31
19
10
37
1.87
40071--40238
85
2.0
84
86
1
237
32
25
19
23
1.97
42236--42308
26
2.7
26
76
19
69
23
2
0
73
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42240--42283
6
7.7
6
87
2
56
20
2
0
77
0.88
42244--42348
17
6.2
17
69
12
56
24
3
0
71
1.02
42262--42348
32
2.7
32
74
12
79
26
3
0
70
1.03
43439--43471
2
16.5
2
100
0
66
51
0
0
48
1.00
43844--43878
16
2.3
15
90
5
52
62
0
2
34
1.10
43819--43876
13
4.3
14
73
6
57
58
0
5
36
1.20
45604--45641
19
2.0
19
85
10
51
36
0
2
60
1.11
46695--46727
2
16.5
2
100
0
66
48
0
0
51
1.00
46936--47060
66
1.9
66
80
9
148
22
8
2
67
1.29
47048--47092
24
1.9
23
90
4
72
26
0
6
66
1.16
47054--47108
23
2.4
21
77
19
56
29
0
5
65
1.15
47188--47216
2
14.5
2
100
0
58
48
0
0
51
1.00
53604--53641
18
2.1
19
95
5
69
34
10
5
50
1.59
60342--60485
73
2.0
73
85
8
195
55
11
19
13
1.68
61079--61105
14
1.9
14
100
0
54
40
22
14
22
1.90
62604--62650
2
25.0
2
83
12
55
42
0
0
57
0.98
62614--62658
10
4.4
10
81
15
56
40
0
0
60
0.97
62604--62653
26
1.9
26
91
0
82
42
0
0
58
0.98
63710--63740
2
15.5
2
93
0
53
48
3
0
48
1.17
64012--64054
14
2.9
15
93
3
70
11
69
11
6
1.35

Tables:   1

The End!