genome.fa.s6826.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006826.1 Hibiscus syriacus cultivar Beakdansim tig00017351_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90930

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691--726	18	1.9	19	94	5	65	38	5	5	50	1.49
9700--9747	21	2.3	21	96	0	87	39	12	0	47	1.41
10654--10746	10	8.1	10	72	25	69	47	16	23	12	1.81
10667--10770	10	8.6	13	68	27	70	48	15	23	13	1.80
10657--10770	24	4.8	24	93	0	192	48	15	22	13	1.80
10751--10811	10	5.8	10	74	11	50	57	13	11	18	1.65
11999--12155	21	7.8	20	72	9	86	38	24	17	19	1.93
12122--12315	20	9.6	20	81	5	221	35	25	19	19	1.95
12122--12315	60	3.2	60	83	0	253	35	25	19	19	1.95
12696--12765	33	2.1	33	91	0	113	11	22	18	47	1.81
12844--12921	41	1.9	41	97	0	147	44	16	25	12	1.83
12845--12920	21	3.7	21	83	3	109	46	17	25	11	1.82
12905--12992	14	5.7	14	75	19	86	43	22	25	9	1.82
12897--13008	33	3.5	33	92	4	192	45	22	23	8	1.80
13025--13114	14	5.7	14	72	23	72	8	24	23	43	1.82
13009--13122	33	3.5	33	96	1	212	9	23	21	45	1.81
13004--13100	19	5.7	18	72	21	93	10	23	22	43	1.84
14801--15269	93	5.1	93	99	0	922	21	12	19	46	1.83
15316--15444	19	7.3	19	75	17	125	45	28	17	8	1.77
15352--15444	33	2.8	32	91	4	150	46	27	18	7	1.76
15316--15444	52	2.5	52	74	14	140	45	28	17	8	1.77
15440--15574	19	7.6	19	73	16	119	11	19	22	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15462--15514	14	3.4	14	75	22	52	9	22	22	45	1.81
15445--15537	33	2.8	33	93	0	159	11	20	20	47	1.81
17494--17529	14	2.6	14	95	0	63	33	0	22	44	1.53
17636--17681	20	2.3	20	96	3	85	45	17	21	15	1.85
17728--17892	19	9.4	19	76	19	180	13	20	18	47	1.82
17706--17864	52	3.0	52	99	0	309	13	23	16	45	1.83
17706--17906	33	5.9	33	75	15	203	13	21	18	46	1.83
20190--20214	12	2.1	12	100	0	50	0	28	0	72	0.86
20389--20435	24	2.0	24	87	8	69	38	21	14	25	1.92
21118--21347	20	11.5	20	85	1	237	19	18	24	36	1.94
26735--26838	38	2.7	40	74	16	103	37	24	17	21	1.94
27501--27535	16	2.2	16	89	0	52	45	0	0	54	0.99
29374--29435	29	2.1	30	84	3	81	27	20	4	46	1.71
29774--29817	18	2.4	19	85	11	65	70	4	2	22	1.17
31691--31732	22	1.9	22	85	9	59	52	9	2	35	1.47
32935--32987	21	2.5	21	84	0	70	20	22	18	37	1.94
32977--33089	20	5.7	20	92	0	181	39	19	19	21	1.92
32977--33107	40	3.3	40	85	8	169	38	20	19	21	1.94
33287--33352	22	3.0	22	93	0	114	25	39	13	21	1.90
33722--33790	20	3.5	20	89	0	93	14	15	24	44	1.84
33737--33792	20	2.8	20	94	0	94	8	16	23	51	1.72
35566--35688	20	6.5	20	79	11	134	39	21	20	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35622--35726	20	5.7	19	72	15	76	40	20	20	18	1.91
35569--35670	53	1.9	54	93	2	179	41	20	21	16	1.90
35569--35720	73	2.1	73	89	0	232	41	20	21	17	1.90
35735--35801	20	3.3	20	91	0	98	23	17	22	35	1.95
37770--37822	14	3.8	14	94	0	88	35	0	16	47	1.48
37928--38023	33	2.8	33	87	3	129	43	21	21	12	1.86
38034--38120	20	4.7	19	80	15	103	12	21	18	47	1.82
38060--38153	33	2.8	34	90	3	145	12	23	20	43	1.86
38080--38133	14	3.5	14	73	22	54	11	24	20	44	1.83
38125--38238	20	5.7	20	93	2	194	17	22	24	35	1.95
40341--40367	14	1.9	14	100	0	54	7	11	29	51	1.64
40567--40620	24	2.2	24	93	0	90	40	20	18	20	1.91
40567--40634	24	2.8	24	84	0	64	38	20	17	23	1.93
41462--41588	20	6.3	20	90	0	191	26	18	27	26	1.98
41582--41687	20	5.3	20	93	0	185	21	18	18	40	1.91
41684--41729	21	2.2	21	92	0	74	39	17	26	17	1.91
43778--43867	47	1.9	47	81	4	110	47	3	2	46	1.31
43839--43895	29	2.0	29	86	6	80	50	0	1	47	1.11
43951--43992	20	2.2	19	86	4	57	64	2	0	33	1.07
43860--44096	120	2.0	119	86	4	329	45	8	8	38	1.63
44254--44317	27	2.3	27	81	7	76	64	4	6	25	1.37
45500--45555	3	19.0	3	89	10	89	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45859--46598	113	6.6	113	91	4	1186	27	20	15	36	1.93
45894--46550	328	2.0	327	93	2	1113	27	20	16	35	1.94
47034--47088	22	2.5	22	87	0	83	36	14	14	34	1.87
47451--47608	54	3.0	54	82	6	200	25	20	15	38	1.92
52287--52356	9	7.9	9	71	7	54	2	20	0	77	0.90
52287--52348	16	3.5	17	76	10	63	3	19	0	77	0.90
52287--52348	26	2.4	26	81	5	72	3	19	0	77	0.90
52350--52397	15	3.5	15	69	30	52	4	14	12	68	1.34
52335--52415	26	3.0	27	96	3	139	3	16	11	69	1.32
57586--57632	17	2.7	18	81	15	55	72	0	2	25	0.96
58228--58269	20	2.2	19	86	4	57	64	2	0	33	1.07
58137--58374	121	2.0	119	84	5	313	45	8	8	37	1.65
58532--58594	27	2.3	27	81	8	74	65	4	6	23	1.36
59786--59826	3	14.0	3	94	5	75	65	0	0	34	0.93
63208--63341	62	2.2	62	84	7	170	37	13	13	35	1.84
64990--65060	2	35.5	2	100	0	142	49	0	0	50	1.00
65247--65337	27	3.4	27	89	3	139	28	16	15	39	1.89
65405--65458	22	2.5	22	96	0	99	35	24	14	25	1.94
67391--67575	61	3.1	61	82	4	223	25	14	5	54	1.61
73474--73537	23	2.8	23	87	0	92	26	25	28	20	1.99
75291--75335	21	2.1	21	87	0	63	15	24	28	31	1.96
78467--78530	23	2.8	23	85	0	92	26	25	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80282--80322	21	2.0	21	85	0	55	17	24	29	29	1.97
87544--87597	21	2.5	22	84	6	83	22	11	25	40	1.87
87588--87637	24	2.1	24	88	0	73	14	20	22	44	1.86

Tables:   1

The End!