genome.fa.s6828.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006828.1 Hibiscus syriacus cultivar Beakdansim tig00017361_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65236

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4049--4203	65	2.4	64	82	5	188	30	18	21	28	1.97
4898--4937	21	2.0	20	86	13	57	27	17	30	25	1.97
7685--7714	2	15.0	2	100	0	60	50	0	0	50	1.00
9433--9481	23	2.1	23	88	0	71	18	8	22	51	1.72
9450--9553	24	4.4	24	87	1	120	22	17	20	40	1.91
10483--10606	31	3.9	32	74	5	83	44	12	7	36	1.69
10906--10964	29	2.0	29	96	0	109	50	20	3	25	1.63
13543--13839	30	9.9	30	77	10	243	38	8	1	51	1.43
13531--13804	119	2.3	120	79	6	299	38	9	1	50	1.45
13825--13857	6	5.7	6	96	3	59	36	12	0	51	1.39
13806--13897	24	3.8	24	71	8	71	38	4	1	56	1.26
13859--13937	30	2.6	30	82	6	79	35	6	3	54	1.44
13864--13948	31	2.8	30	76	5	82	37	5	3	52	1.43
13964--14026	30	2.1	31	84	3	83	57	0	4	38	1.20
14855--14987	67	2.0	65	95	2	239	51	3	6	39	1.45
27657--27725	2	34.5	2	100	0	138	50	0	0	49	1.00
27891--27990	24	4.2	24	74	5	94	47	17	13	23	1.82
27884--27992	48	2.3	48	77	0	119	48	16	12	22	1.80
30476--30509	15	2.3	15	100	0	68	23	26	35	14	1.94
30498--30567	18	4.2	18	78	17	96	12	20	50	17	1.78
30475--30506	7	4.4	7	92	7	55	25	28	34	12	1.92
30509--30545	13	2.8	13	91	0	65	13	21	48	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32507--32539	2	16.5	2	100	0	66	51	0	0	48	1.00
32700--32798	24	4.2	24	71	7	85	46	17	13	23	1.82
35284--35322	7	5.3	7	88	11	60	25	25	35	12	1.92
35284--35322	15	2.6	15	100	0	78	25	25	35	12	1.92
35325--35361	13	2.8	13	95	0	65	16	18	48	16	1.81
35312--35383	18	4.3	18	76	16	91	13	19	50	16	1.79
35284--35325	8	5.5	8	91	8	70	23	26	35	14	1.93
35312--35378	31	2.2	31	94	0	116	14	19	49	16	1.80
38056--38112	23	2.6	22	83	5	62	40	5	8	45	1.58
38338--38403	30	2.3	27	80	12	71	50	3	1	45	1.26
38360--38402	19	2.3	19	84	8	52	53	2	0	44	1.13
38411--38503	49	1.9	49	82	8	120	53	2	0	44	1.12
38524--38622	39	2.6	38	76	13	103	50	0	1	48	1.07
38604--38656	19	2.8	18	80	5	61	54	0	1	43	1.11
38738--38774	18	2.1	18	89	0	56	54	8	10	27	1.63
48226--48294	35	1.9	36	97	2	131	49	11	15	23	1.77
52315--52344	3	10.0	3	100	0	60	66	0	0	33	0.92
52280--52343	18	3.4	19	73	12	51	71	0	6	21	1.07
52457--52511	27	2.1	26	86	10	76	78	1	0	20	0.85
53675--53729	2	29.0	2	83	10	71	52	0	1	45	1.11
54307--54834	169	3.2	167	86	3	692	25	20	24	30	1.98
54307--54836	84	6.4	85	77	4	501	25	20	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54833--54953	33	3.5	34	89	6	183	29	8	19	42	1.81
55157--55283	43	3.0	42	94	3	218	31	18	23	26	1.97
58269--58649	41	9.2	41	73	11	228	32	15	20	32	1.93
58518--58630	42	2.7	42	87	4	158	36	15	17	30	1.91
58780--58938	37	4.4	36	85	3	203	38	13	21	25	1.90
58780--58938	73	2.2	73	87	1	221	38	13	21	25	1.90
58924--58998	29	2.6	29	93	0	132	38	12	16	33	1.85
59003--59051	20	2.4	21	89	3	73	40	14	18	26	1.89
59019--59106	37	2.5	34	80	10	88	35	14	20	29	1.93
60381--60731	95	3.7	95	90	3	548	31	18	17	32	1.94
65103--65156	3	18.0	3	100	0	108	66	0	0	33	0.92

Tables:   1

The End!