genome.fa.s683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000683.1 Hibiscus syriacus cultivar Beakdansim tig00001333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93667

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3955--4054	42	2.4	42	75	8	96	27	25	11	37	1.89
9622--9661	13	2.7	16	70	22	50	25	30	45	0	1.54
9889--10045	77	2.0	77	97	0	296	24	29	21	24	1.99
16845--16944	30	3.2	30	64	20	78	36	10	14	40	1.79
16835--16963	64	2.0	64	100	0	258	34	13	15	37	1.86
18372--18419	16	2.8	17	78	6	53	37	4	27	31	1.76
19198--19282	31	2.7	31	77	1	89	27	31	28	12	1.93
19751--19800	26	1.9	26	88	8	75	30	14	12	44	1.81
33782--33856	31	2.4	31	93	4	125	44	12	6	37	1.68
49016--49076	28	2.2	28	82	11	72	37	11	8	42	1.71
50475--50535	31	2.0	31	86	0	86	47	0	1	50	1.10
71334--71388	21	2.6	22	91	8	96	23	16	27	32	1.96
71376--71629	20	12.6	20	84	8	284	13	22	22	41	1.88
71439--71510	22	3.4	21	73	11	76	19	19	23	37	1.94
71419--71529	41	2.7	41	92	4	179	18	20	22	38	1.93
72311--72373	6	10.5	6	100	0	126	0	15	50	33	1.45
72472--72776	41	7.5	41	93	1	515	39	23	18	19	1.93
73537--73561	4	6.2	4	100	0	50	28	0	0	72	0.86
75380--75442	29	2.1	29	85	8	83	33	12	23	30	1.92
75850--75880	15	2.1	15	100	0	62	74	6	0	19	1.03
75867--75933	27	2.4	28	85	12	93	68	1	0	29	0.98
76497--76543	25	1.9	25	82	4	60	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77088--77118	7	4.4	7	100	0	62	0	29	54	16	1.42
84427--84464	15	2.6	15	87	4	51	39	0	2	57	1.12
85151--85201	25	2.2	21	75	24	50	64	3	1	29	1.22

Tables:   1

The End!