genome.fa.s6830.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006830.1 Hibiscus syriacus cultivar Beakdansim tig00017366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83537

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1848--1890	20	2.2	20	87	4	61	46	0	2	51	1.13
2137--2177	9	4.6	9	82	11	57	56	0	0	43	0.99
4367--4464	49	2.0	49	95	0	178	37	19	15	27	1.92
23385--23435	7	7.4	7	86	4	68	29	27	25	17	1.98
23451--23490	9	4.3	9	84	6	53	25	30	30	15	1.95
23453--23491	19	2.1	19	100	0	78	25	30	25	17	1.97
29193--29226	18	1.9	17	88	5	50	55	5	5	32	1.48
38155--38228	25	2.9	26	88	4	98	31	18	22	27	1.98
38450--38495	22	2.1	22	92	4	76	26	0	10	63	1.27
44298--44371	30	2.5	30	86	0	112	37	13	29	18	1.90
45784--46292	69	7.4	69	88	0	759	33	1	37	27	1.65
45784--46292	206	2.5	207	97	0	948	33	1	37	27	1.65
49394--49424	2	15.5	2	100	0	62	51	0	48	0	1.00
51351--51396	21	2.2	21	88	3	67	39	6	2	52	1.40
55588--55625	18	2.1	18	95	0	67	50	10	18	21	1.76
65328--65404	24	3.2	25	80	7	70	18	18	18	45	1.86
65365--65422	12	4.8	12	80	0	62	12	17	18	51	1.75
68425--68475	9	6.0	9	75	13	54	35	0	1	62	1.06
68425--68473	16	3.0	16	90	3	71	36	0	2	61	1.08
72074--72802	200	3.6	200	83	6	825	29	15	14	40	1.87
74614--74685	19	3.8	19	100	0	144	30	16	30	22	1.96
75204--75507	149	2.0	149	98	0	590	27	15	21	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75485--75530	23	2.0	23	91	0	74	21	23	26	28	1.99
77164--77822	200	3.2	201	91	2	1052	30	15	16	37	1.90
80057--80100	21	2.1	21	91	0	70	15	34	9	40	1.79

Tables:   1

The End!