genome.fa.s6834.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006834.1 Hibiscus syriacus cultivar Beakdansim tig00017372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74057

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108--142	13	2.6	14	86	13	56	40	5	8	45	1.58
2212--2313	44	2.4	44	85	6	138	27	20	21	30	1.98
9229--9404	60	2.9	58	75	15	162	35	21	5	38	1.75
15943--15975	12	2.8	12	86	4	50	15	12	42	30	1.83
15992--16052	24	2.6	24	84	7	81	45	0	0	54	1.00
16153--16181	6	4.8	6	100	0	58	0	65	17	17	1.27
16199--16223	6	4.2	6	100	0	50	0	64	16	20	1.30
18749--18779	12	2.6	12	89	0	53	54	6	0	38	1.26
20488--20610	29	4.3	29	76	6	101	41	23	8	26	1.82
20618--20659	13	3.3	13	86	6	68	16	21	45	16	1.86
20638--20691	18	3.0	18	88	0	90	18	16	46	18	1.85
20708--20749	11	4.1	11	82	17	63	35	26	19	19	1.95
20711--20749	19	2.0	20	95	5	71	35	25	20	17	1.95
23610--23651	13	3.3	13	86	6	68	16	21	45	16	1.86
23630--23683	18	3.0	18	94	0	99	16	16	48	18	1.82
23614--23650	12	2.9	13	88	8	58	18	18	45	16	1.85
23686--23740	10	5.6	10	85	10	78	34	29	21	14	1.93
23686--23741	19	2.9	19	87	10	78	33	28	21	16	1.95
25328--25371	21	2.2	19	84	8	52	38	2	2	56	1.24
25335--25379	18	2.3	20	85	11	58	40	2	0	57	1.11
25334--25378	19	2.3	19	81	14	56	37	2	0	60	1.09
25447--25500	26	2.1	26	86	13	76	37	7	7	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25981--26044	32	2.0	32	100	0	128	53	12	0	34	1.39
25991--26760	80	9.7	79	76	13	681	52	14	0	33	1.42
26151--26202	18	3.1	18	68	21	58	55	11	0	32	1.36
26103--26167	22	3.0	22	90	0	112	50	12	0	36	1.40
26261--26309	22	2.2	22	85	3	62	55	12	0	32	1.37
26315--26388	22	3.2	22	75	16	69	54	16	0	29	1.43
26054--26568	213	2.4	212	91	3	842	52	13	0	34	1.41
26390--26460	26	3.0	23	78	13	90	52	15	0	32	1.43
26394--26468	26	3.2	22	78	14	87	54	16	0	29	1.42
26472--26514	22	2.0	22	100	0	86	51	13	0	34	1.42
26474--26522	22	2.2	22	88	3	71	55	14	0	30	1.40
26526--26568	22	2.0	22	100	0	86	51	13	0	34	1.42
26528--26576	22	2.2	22	88	3	71	55	14	0	30	1.40
26548--26815	32	9.7	31	68	24	119	52	14	0	32	1.42
26125--26932	134	6.1	129	84	9	861	52	13	0	34	1.40
26578--26648	26	3.0	23	75	13	81	53	15	0	30	1.42
26582--26656	26	3.2	22	75	14	78	56	16	0	28	1.41
26740--26782	22	2.0	22	100	0	86	51	13	0	34	1.42
26742--26790	22	2.2	22	88	3	71	55	14	0	30	1.40
26054--26814	54	14.3	54	76	13	688	52	13	0	33	1.41
26865--27029	15	10.5	15	79	14	181	52	3	0	44	1.21
26839--27029	47	4.0	48	84	7	239	51	4	0	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26759--27014	80	3.2	79	79	10	202	51	8	0	39	1.35
26955--27052	45	2.3	43	87	5	135	48	1	1	48	1.14
28768--28882	57	2.0	57	96	0	212	33	31	21	13	1.92
28955--29039	24	3.6	24	79	3	109	34	21	18	25	1.96
30010--30062	26	2.0	26	82	7	63	26	20	15	37	1.92
32700--32745	22	2.1	22	95	0	83	41	6	13	39	1.70
34834--34897	3	20.7	3	87	6	92	37	0	0	62	0.95
36387--36440	8	6.4	9	85	10	55	44	0	1	53	1.11
36402--36439	2	19.5	2	94	5	69	50	0	0	50	1.00
41487--41526	7	5.7	7	93	0	62	80	0	20	0	0.72
41487--41526	14	2.9	14	92	0	71	80	0	20	0	0.72
44902--45063	75	2.2	76	78	6	170	30	14	20	34	1.92
46313--46370	22	2.6	22	86	5	82	32	13	13	39	1.85
47144--47342	45	4.2	45	72	13	164	27	22	19	31	1.98
47040--47277	121	2.0	121	97	0	449	26	21	19	32	1.97
47172--47378	101	2.0	101	94	1	362	27	21	19	31	1.97
47366--47463	45	2.2	45	86	0	133	28	24	17	29	1.97
47051--47499	222	2.0	222	92	0	754	26	21	18	32	1.97
47280--47507	121	1.9	121	95	1	413	26	21	18	32	1.97
47411--47584	77	2.3	76	90	1	276	28	20	17	33	1.96
47558--47647	45	2.0	45	91	4	146	26	23	17	32	1.97
47284--47652	198	1.9	197	89	1	569	27	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47807--47877	3	22.7	3	77	8	70	39	0	1	59	1.06
49344--49395	27	2.0	25	85	14	70	34	7	3	53	1.48
52950--53018	24	2.9	24	95	0	120	42	4	18	34	1.71
64220--64270	27	1.9	27	84	4	68	15	5	9	68	1.36
66871--66901	16	1.9	16	100	0	62	32	6	12	48	1.67
68607--68658	2	26.0	2	100	0	104	50	0	0	50	1.00
73140--73206	34	1.9	35	85	8	93	47	19	10	22	1.79
73372--73426	23	2.4	23	78	0	65	30	21	10	36	1.88

Tables:   1

The End!