genome.fa.s6835.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006835.1 Hibiscus syriacus cultivar Beakdansim tig00017374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88386

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1765--1817	21	2.5	21	81	6	63	22	26	18	32	1.97
1803--1842	20	2.0	20	85	0	53	35	20	20	25	1.96
2694--2746	24	2.2	24	90	3	81	20	16	20	41	1.90
5160--5248	20	4.4	20	87	2	126	35	24	21	17	1.95
5220--5315	33	2.8	33	84	3	111	42	18	21	16	1.89
5325--5411	20	4.7	19	72	16	76	13	22	20	42	1.88
5364--5412	19	2.5	19	83	3	62	16	22	22	38	1.92
5549--5612	33	1.9	34	90	3	103	15	21	17	45	1.85
7127--7219	42	2.2	42	80	3	107	22	17	39	20	1.92
7700--7768	20	3.5	20	95	0	120	39	23	20	17	1.92
7814--7937	20	6.5	20	82	10	152	20	18	20	40	1.92
9807--9876	20	3.5	20	90	0	86	41	25	17	15	1.89
9920--9966	20	2.3	20	85	0	58	23	19	21	36	1.95
10555--10679	20	6.2	20	95	0	205	26	20	19	34	1.96
10665--10706	21	2.0	21	90	0	66	35	16	26	21	1.94
14620--14644	9	2.8	9	100	0	50	36	40	12	12	1.79
23673--23716	22	2.0	23	95	4	81	40	4	45	9	1.56
23678--23724	22	2.1	22	88	0	67	44	2	48	4	1.34
37588--37660	15	4.8	16	76	6	62	0	21	9	68	1.18
38074--38114	14	2.9	15	92	7	68	39	0	0	60	0.96
38110--38167	3	19.7	3	92	3	100	65	0	1	32	1.03
38392--38822	117	3.7	116	88	3	582	28	19	12	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38796--38970	94	1.9	93	85	2	242	30	16	18	34	1.92
38876--39083	113	1.8	113	95	0	380	30	17	14	37	1.90
38678--39144	206	2.2	210	86	4	633	29	18	14	37	1.91
39887--40434	82	6.7	82	94	2	942	36	23	12	26	1.91
41197--41242	19	2.6	18	86	10	60	50	13	6	30	1.66
53872--53902	16	1.9	16	100	0	62	3	19	0	77	0.90
53905--53945	19	2.1	20	82	13	50	0	24	7	68	1.15
54358--54398	14	2.9	15	92	7	68	39	0	0	60	0.96
54394--54443	3	16.7	3	91	0	82	66	0	2	32	1.03
61016--61098	24	3.5	24	93	3	141	18	27	27	26	1.98
69739--69773	18	1.9	18	88	0	52	11	40	25	22	1.88

Tables:   1

The End!