Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006836.1 Hibiscus syriacus cultivar Beakdansim tig00017375_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72028

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1854--2184
114
2.9
113
84
4
394
35
15
21
28
1.94
2502--2551
3
15.7
3
83
8
55
38
0
0
62
0.96
2505--2558
27
2.1
25
89
6
81
42
1
0
55
1.10
3713--3755
22
2.0
22
90
9
70
20
4
0
74
1.00
4611--4671
2
31.0
2
96
3
115
50
0
0
49
1.00
4928--4953
13
2.0
13
100
0
52
38
7
7
46
1.61
5761--5831
23
3.1
23
83
2
81
39
14
33
12
1.83
6353--6404
27
2.0
26
82
14
63
67
1
5
25
1.23
6985--7009
2
12.5
2
100
0
50
48
0
0
52
1.00
10245--10279
3
11.7
3
88
11
54
71
0
0
28
0.86
10672--10778
42
2.6
41
76
14
119
31
21
20
26
1.98
11124--11226
42
2.5
42
79
1
118
34
17
21
26
1.95
10865--11293
196
2.2
197
88
2
614
34
16
18
31
1.93
10611--11486
451
1.9
450
89
2
1337
33
16
17
31
1.93
11457--11508
20
2.7
19
88
5
77
36
23
19
21
1.95
12662--12689
12
2.3
12
100
0
56
32
0
14
53
1.41
13210--13272
2
31.5
2
96
0
117
49
1
0
49
1.10
23282--23327
20
2.3
19
85
14
58
50
10
13
26
1.74
25070--25108
16
2.4
16
95
0
69
23
12
12
51
1.74
38725--38765
18
2.3
18
91
4
66
39
19
19
21
1.93
38586--39424
419
2.0
419
89
0
1273
37
10
21
30
1.87
43252--43286
16
2.2
17
90
10
56
40
11
11
37
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45533--45557
2
12.5
2
100
0
50
48
0
0
52
1.00
45543--45628
34
2.5
33
94
5
154
37
0
0
62
0.95
45551--45615
25
2.6
25
78
7
60
35
0
0
64
0.94
57796--57834
19
2.2
19
86
13
57
33
7
17
41
1.79
62782--62861
23
3.4
23
81
3
88
46
16
12
25
1.82
66987--67041
3
19.0
3
81
10
62
36
0
0
63
0.95
68538--68601
17
3.4
17
70
25
56
42
3
0
54
1.16
68542--68611
20
3.2
24
73
26
91
40
2
0
57
1.14
68542--68622
22
3.9
21
79
11
94
39
2
0
58
1.12
68537--68622
41
2.1
42
97
2
165
41
2
0
55
1.12
68551--68629
21
3.8
20
72
12
70
39
1
1
58
1.14
69267--69323
25
2.3
26
78
9
64
26
3
1
68
1.15
70694--70757
17
3.4
17
70
25
56
42
3
0
54
1.16
70698--70767
20
3.2
24
73
26
91
40
2
0
57
1.14
70698--70778
22
3.9
21
79
11
94
39
2
0
58
1.12
70693--70778
41
2.1
42
97
2
165
41
2
0
55
1.12
70707--70785
21
3.8
20
72
12
70
39
1
1
58
1.14
70853--70895
22
1.9
23
85
4
61
51
4
0
44
1.22

Tables:   1

The End!