Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006839.1 Hibiscus syriacus cultivar Beakdansim tig00017390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39033

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40--87
24
1.9
26
83
8
64
35
12
2
50
1.52
219--259
4
10.8
4
94
5
68
48
24
0
26
1.51
2691--2766
14
5.4
14
72
13
66
56
1
3
38
1.26
2684--2795
22
5.2
22
75
13
76
55
1
3
39
1.28
2689--2798
36
3.0
36
78
10
116
56
1
3
38
1.28
2711--2824
36
3.2
35
81
7
113
54
2
2
40
1.28
2778--2819
21
2.0
20
82
13
50
52
4
0
42
1.22
2689--2824
73
1.9
73
79
17
158
55
2
2
39
1.27
2794--2851
13
4.5
13
70
23
50
46
3
0
50
1.18
2789--2853
21
3.2
21
72
18
66
47
3
0
49
1.17
2778--2860
30
2.8
31
77
16
79
46
3
0
49
1.19
5827--5856
14
2.1
14
100
0
60
43
16
13
26
1.85
8873--8964
27
3.4
27
100
0
184
6
43
3
46
1.45
9035--9069
18
1.9
18
94
0
61
14
0
17
68
1.21
14470--14516
3
16.0
3
91
4
78
63
0
2
34
1.06
14716--14830
44
2.6
45
79
2
117
34
19
15
30
1.93
14847--15063
118
1.8
119
88
3
330
25
21
15
37
1.92
15572--15659
37
2.4
37
82
0
104
42
19
15
22
1.89
16529--16642
57
2.0
57
84
6
151
40
18
8
32
1.81
16550--16919
109
3.3
107
81
7
375
37
22
9
30
1.86
16550--16932
55
6.9
54
77
7
333
38
22
9
30
1.85
20643--20697
28
2.0
28
85
7
76
20
21
23
34
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23727--23769
21
2.0
21
100
0
86
23
13
18
44
1.86
25801--25837
17
2.2
17
90
4
58
40
8
0
51
1.32
28785--28839
27
2.0
27
100
0
110
45
14
14
25
1.83
33522--33623
21
4.9
21
75
7
100
29
0
23
46
1.59
33536--33588
27
2.0
27
82
14
65
28
0
22
49
1.50
34519--34555
20
1.9
19
89
10
58
35
16
24
24
1.95
36016--36062
23
2.0
23
100
0
94
25
10
21
42
1.85
36155--36205
19
2.5
21
87
6
70
27
5
23
43
1.77
36209--36238
13
2.3
13
94
0
51
33
0
23
43
1.54
36256--36341
14
6.2
14
76
11
70
16
0
32
51
1.45
36294--36349
8
7.7
7
84
7
60
14
0
37
48
1.44
36316--36352
8
4.6
8
100
0
74
13
0
35
51
1.41
36484--36557
35
2.1
35
84
0
94
27
1
21
50
1.57

Tables:   1

The End!