Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000684.1 Hibiscus syriacus cultivar Beakdansim tig00001337_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79726

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2714--2780
22
3.0
22
84
4
73
23
10
5
59
1.52
8523--8574
26
2.0
26
100
0
104
42
15
7
34
1.75
12823--12875
24
2.2
24
80
12
65
47
22
22
7
1.76
13459--13483
5
5.0
5
100
0
50
20
60
20
0
1.37
18186--18218
16
2.1
16
88
5
50
48
0
6
45
1.27
19761--19801
3
14.0
3
80
14
50
63
0
0
36
0.95
19931--20645
76
9.4
76
97
0
1297
35
21
20
22
1.96
21047--21717
112
6.0
113
89
3
944
29
18
13
38
1.89
21047--21682
225
2.8
223
89
2
961
29
18
13
38
1.89
21516--21560
23
1.9
23
82
13
56
15
26
6
51
1.68
22120--22174
22
2.5
22
90
0
92
38
14
12
34
1.84
24708--24963
83
3.1
83
97
0
476
35
20
15
28
1.93
31942--31985
20
2.2
20
84
8
54
50
2
6
40
1.42
32467--32499
16
2.1
16
88
5
50
48
0
6
45
1.27
32965--33028
2
32.0
2
100
0
128
50
0
0
50
1.00
34091--34125
18
1.9
18
88
11
54
62
0
0
37
0.95
43956--44033
10
7.7
10
84
12
106
15
20
26
37
1.92
43956--44029
21
3.6
21
96
1
132
14
18
27
39
1.90
44035--44072
17
2.2
17
95
0
67
21
44
23
10
1.83
45606--45675
36
1.9
36
91
0
113
42
21
11
24
1.85
56285--56336
18
2.9
18
97
0
95
15
11
40
32
1.83
57510--57582
18
4.2
17
77
5
74
41
8
15
35
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57510--57582
17
4.2
17
77
8
76
41
8
15
35
1.77
57682--57720
20
2.0
20
84
0
51
46
17
5
30
1.70
59580--59630
9
5.3
9
81
11
57
7
3
5
82
0.94
59580--59630
19
2.7
18
84
9
57
7
3
5
82
0.94
59820--59852
12
2.8
12
100
0
66
57
0
9
33
1.30
59943--59994
18
2.9
18
94
0
86
17
9
40
32
1.82
61169--61259
18
5.2
17
88
4
119
40
6
16
36
1.75
61169--61259
35
2.6
34
83
10
112
40
6
16
36
1.75
61164--61277
53
2.2
53
79
4
124
43
6
16
33
1.73
61359--61397
20
2.0
20
89
0
60
41
20
7
30
1.80
63991--64038
24
2.0
25
88
12
73
45
0
8
45
1.33
64006--64409
35
11.5
35
79
7
381
43
3
9
43
1.53
64456--64509
3
18.7
3
75
21
53
31
0
1
66
1.02
66571--66608
21
1.9
20
84
10
51
15
5
0
78
0.91
69573--69632
21
2.9
21
94
0
102
25
26
23
25
2.00
69631--69695
31
2.1
31
82
5
78
35
24
15
24
1.94
79626--79726
30
3.4
30
86
9
143
31
21
20
25
1.98

Tables:   1

The End!