genome.fa.s6840.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006840.1 Hibiscus syriacus cultivar Beakdansim tig00017391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150161

Tables:   1   2   

This is table  1  of  2  ( 121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1217--1242	2	13.0	2	100	0	52	50	0	0	50	1.00
3053--3100	20	2.4	20	92	0	78	47	22	2	27	1.62
3062--3101	20	2.0	20	100	0	80	45	25	5	25	1.73
4111--4136	13	2.0	13	100	0	52	53	0	0	46	1.00
4189--4235	23	2.0	24	84	12	62	59	8	2	29	1.39
7098--7138	8	5.2	8	82	5	57	34	0	29	36	1.58
7255--8069	128	6.4	128	92	0	1369	21	23	20	34	1.97
7255--8069	385	2.1	384	92	0	1369	21	23	20	34	1.97
8363--8470	34	3.1	34	86	1	153	37	3	4	54	1.39
8987--9058	21	3.5	21	83	9	94	22	27	33	16	1.95
10843--10921	32	2.4	34	82	6	99	59	1	0	39	1.06
10839--10925	35	2.5	35	81	14	99	58	1	0	40	1.05
10871--10949	35	2.3	34	80	8	88	64	3	0	31	1.11
12995--13060	14	4.6	14	79	7	69	51	1	0	46	1.10
12995--13089	48	2.1	44	82	7	109	49	2	0	48	1.13
17565--17623	31	2.0	29	90	6	91	25	16	6	50	1.70
19738--19819	32	2.7	30	75	7	83	64	10	12	12	1.50
21594--22037	126	3.6	125	84	6	501	28	19	21	30	1.98
27996--28087	30	2.9	32	78	12	91	60	10	13	15	1.58
32085--32136	26	2.0	27	96	3	97	36	3	9	50	1.54
32403--32441	20	2.1	19	85	9	53	35	5	0	58	1.20
32510--32610	51	2.0	51	96	0	184	40	12	17	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36571--36601	2	15.5	2	100	0	62	51	0	0	48	1.00
43944--43991	19	2.5	19	86	0	60	64	8	6	20	1.43
48381--48411	2	15.5	2	100	0	62	48	0	0	51	1.00
48801--48878	2	39.0	2	100	0	156	50	0	0	50	1.00
49401--49454	17	3.3	17	76	10	58	33	1	12	51	1.51
50131--50195	13	4.3	15	78	20	57	66	1	0	32	1.01
50133--50213	19	4.6	18	70	16	53	65	2	0	32	1.06
50164--50200	12	2.9	13	88	8	58	72	0	0	27	0.84
50163--50200	13	3.0	13	80	3	51	73	0	0	26	0.83
50527--50586	23	2.3	27	83	13	74	56	0	1	41	1.09
50527--50593	25	2.7	25	79	11	75	53	0	1	44	1.09
50723--50775	9	5.5	10	78	17	51	47	1	0	50	1.12
50678--50762	42	2.0	43	86	2	118	51	3	0	44	1.18
50753--50801	8	6.2	8	77	13	57	57	0	0	42	0.99
50729--50789	17	3.4	17	84	10	77	49	1	0	49	1.10
50754--50807	14	3.6	14	85	7	63	61	0	0	38	0.96
50906--50982	17	4.6	17	72	20	65	57	0	0	42	0.99
50927--50984	20	2.8	21	84	10	75	53	0	0	46	1.00
50873--50982	8	13.9	8	69	18	52	55	0	0	44	0.99
50909--50992	21	3.9	21	74	22	75	57	1	0	41	1.06
51011--51081	27	2.4	28	81	13	81	54	0	2	42	1.14
56568--56644	31	2.5	31	78	2	82	27	29	27	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61458--61581	63	2.0	63	82	6	153	26	28	27	17	1.98
63741--63788	2	26.0	2	80	16	59	47	0	2	50	1.12
64070--64099	15	1.9	16	93	6	53	36	0	0	63	0.95
64061--64102	15	3.1	14	77	16	52	35	0	0	64	0.94
64965--65340	54	6.9	54	90	2	590	28	21	17	32	1.96
68352--68558	105	2.0	105	94	0	360	32	17	13	36	1.89
84222--84368	68	2.2	68	81	4	163	18	19	19	42	1.90
88816--89004	60	3.2	60	81	4	193	35	16	5	42	1.71
89136--89283	59	2.5	60	82	3	174	43	3	20	32	1.68
89853--89921	23	3.0	23	84	0	93	26	10	18	44	1.81
89854--89962	47	2.3	46	82	1	128	27	11	14	46	1.78
93025--93068	21	2.0	22	82	4	54	45	0	6	47	1.29
93288--93327	2	20.0	2	100	0	80	50	0	0	50	1.00
93337--93370	17	2.0	17	88	11	52	64	0	5	29	1.17
93376--93408	16	2.1	16	88	11	50	60	0	0	39	0.97
94645--94696	3	17.7	3	84	4	52	61	0	0	38	0.96
95001--95442	113	4.0	113	88	3	587	28	18	15	38	1.91
95001--95442	225	2.0	220	85	4	591	28	18	15	38	1.91
95837--95889	22	2.4	22	87	0	79	37	13	15	33	1.86
96258--96413	54	2.9	54	90	0	240	23	25	15	36	1.93
98531--98750	114	1.9	114	91	0	359	30	20	15	34	1.93
103022--103068	14	3.5	14	71	11	53	57	8	10	23	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103118--103159	7	6.0	7	78	10	50	54	14	16	14	1.71
105265--105308	21	2.0	22	82	4	54	45	0	6	47	1.29
105371--105456	41	2.1	41	82	8	104	53	1	1	44	1.15
105534--105559	2	13.0	2	100	0	52	50	0	0	50	1.00
105569--105602	17	2.0	17	88	11	52	64	0	5	29	1.17
105608--105640	16	2.1	16	88	11	50	60	0	0	39	0.97
108180--108236	22	2.5	23	85	5	71	61	0	0	38	0.96
108533--108567	2	17.5	2	100	0	70	51	0	0	48	1.00
112288--112346	9	6.2	9	75	11	55	27	59	5	8	1.48
112325--112429	36	2.9	36	73	0	111	23	54	4	17	1.62
112398--112539	54	2.6	54	95	0	248	19	53	11	14	1.72
112539--112659	48	2.5	48	86	5	156	23	52	7	16	1.69
112311--112659	180	2.0	174	93	3	599	22	53	8	16	1.69
112506--112718	72	3.0	71	78	4	167	23	53	6	16	1.65
112452--112851	120	3.3	120	96	2	719	22	53	7	16	1.69
112637--112984	48	7.1	48	74	7	193	22	53	5	18	1.64
112587--112731	72	2.0	72	87	2	211	22	52	6	17	1.69
112617--112838	72	3.1	72	81	1	203	22	53	7	16	1.68
112722--112942	72	3.1	72	92	0	343	23	53	4	18	1.64
112842--112899	12	4.8	12	73	0	53	25	53	0	20	1.46
113052--113086	18	1.9	18	94	0	61	34	60	0	5	1.21
113025--113071	24	2.0	24	91	0	76	31	55	2	10	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113028--113113	42	2.0	42	86	4	120	30	58	3	8	1.44
114459--114486	2	14.0	2	100	0	56	50	0	0	50	1.00
115416--115482	29	2.3	29	97	2	125	44	2	2	49	1.32
115419--115494	29	2.8	26	86	13	86	44	3	2	48	1.35
120849--120873	8	3.1	8	100	0	50	24	0	0	76	0.80
120929--120982	5	10.4	5	88	7	81	0	75	0	24	0.80
122371--122411	21	2.0	20	85	9	55	19	9	21	48	1.77
126279--126387	52	2.1	52	92	0	182	49	5	4	40	1.46
130413--130460	23	2.1	23	84	0	60	37	12	16	33	1.86
130936--131008	23	3.2	23	92	0	119	38	21	5	34	1.77
131377--131439	23	2.7	23	92	0	99	38	20	4	36	1.74
130775--132071	431	3.0	428	96	1	2339	39	12	7	40	1.71
131803--131865	23	2.7	23	92	0	99	38	20	4	36	1.74
132212--132276	25	2.6	25	95	0	112	35	12	10	41	1.78
134740--135232	183	2.7	183	96	0	898	33	17	15	34	1.91
135612--135676	23	2.8	23	88	0	94	40	21	4	33	1.74
137273--137352	9	8.6	9	72	8	61	22	33	6	37	1.79
137272--137354	12	6.9	12	87	0	94	22	32	7	37	1.82
137272--137352	6	13.5	6	82	0	81	23	33	6	37	1.80
137288--137369	36	2.3	36	89	0	119	20	31	8	39	1.83
137276--137369	6	15.7	6	80	4	73	21	31	7	39	1.81
138952--139779	200	4.1	200	96	0	1505	31	17	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138952--139779	399	2.1	400	96	0	1523	31	17	14	36	1.90
139901--139946	19	2.4	19	92	0	74	56	10	2	30	1.46
141733--141798	33	2.0	33	90	0	105	21	46	1	30	1.60
141832--141875	21	2.1	21	86	0	61	18	31	9	40	1.81
144053--144095	20	2.3	18	85	14	61	20	16	11	51	1.75
144058--144104	20	2.4	19	82	10	67	19	17	10	53	1.72
144029--144492	178	2.6	179	85	4	607	26	17	13	42	1.87
144414--144451	20	1.9	20	94	0	67	18	21	13	47	1.82
144472--144524	20	2.6	21	88	11	92	28	15	16	39	1.89
146121--146278	78	2.0	75	80	11	167	44	10	15	30	1.79

Tables:   1   2