Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01006840.1 Hibiscus syriacus cultivar Beakdansim tig00017391_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 150161
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


File 2 of 2

Found at i:146541 original size:194 final size:194

Alignment explanation


    Indices: 146187--146620  Score: 508
    Period size: 194  Copynumber: 2.2  Consensus size: 194

     146177 GAAAATAGGT

                      *         *                                            
     146187 AACATC-AAAACG-TAATTAAAATGTAATAGGTAAATTTACAATGTAACTGGTATAAATATACCA
          1 AACATCGAAACCGATAATTACAA-GTAATAGGTAAATTTACAATGTAACTGGTATAAATATACCA

                          *               *                                  
     146250 GTTTTATGAGAATATGTCAACATAACGTATTGACACAAATTTAAAAAGTGTCGATACATTTTGTC
         65 GTTTTATGAGAATAGGTCAACATAACGTATCGACACAAATTTAAAAAGTGTCGATACATTTTGTC

              *        *                                                *    
     146315 CATAATGAATGTCAAACGAGGTGCACGCATAAAGTGTCGATACAGTTATTAAAA-GTATCGATCC
        130 CAGAATGAATGCCAAACGAGGTGCACGCATAAAGTGTCGATACA--T-TTAAAATGTATCAATCC

                
     146379 CAAA
        192 C-AA

                                                                   *         
     146383 AACATCGAAACCGATAATTACAA-TAATAGGTAAATTTACAATGT-ACTCGGTA-GAA-ATACCA
          1 AACATCGAAACCGATAATTACAAGTAATAGGTAAATTTACAATGTAACT-GGTATAAATATACCA

                               *      *           **      ***               *
     146444 GTTTTATGAGAAATAGGTCTACATAATGTATCGACAC-GTTTTAAGTTTGTGTCGATAC-TTTTT
         65 GTTTTATGAG-AATAGGTCAACATAACGTATCGACACAAATTTAA-AAAGTGTCGATACATTTTG

                           *         * *                               *     
     146507 TCCAGAATGAATGCCCAACGAGGTGTATGCATAAAGTGTCGATACATTTAAAATTGTATTAATCC
        128 TCCAGAATGAATGCCAAACGAGGTGCACGCATAAAGTGTCGATACATTTAAAA-TGTATCAATCC

               
     146572 CAA
        192 CAA

              *                 *                  *      
     146575 AATATCGAAACCGATAATTATAATGTAATAGGTAAATTTGCAATGT
          1 AACATCGAAACCGATAATTACAA-GTAATAGGTAAATTTACAATGT

     146621 TATCGATATA


Statistics
Matches: 206,  Mismatches: 23, Indels: 20
        0.83            0.09        0.08

Matches are distributed among these distances:
 191    6  0.03
 192   24  0.12
 193    9  0.04
 194   86  0.42
 195   37  0.18
 196   31  0.15
 197    5  0.02
 198    8  0.04

ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31


Consensus pattern (194 bp):   
AACATCGAAACCGATAATTACAAGTAATAGGTAAATTTACAATGTAACTGGTATAAATATACCAG
TTTTATGAGAATAGGTCAACATAACGTATCGACACAAATTTAAAAAGTGTCGATACATTTTGTCC
AGAATGAATGCCAAACGAGGTGCACGCATAAAGTGTCGATACATTTAAAATGTATCAATCCCAA

Done.