genome.fa.s6841.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006841.1 Hibiscus syriacus cultivar Beakdansim tig00017392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66560

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3231--3271	21	2.0	21	100	0	82	51	24	24	0	1.49
5251--5656	205	2.0	202	96	3	744	37	16	13	32	1.87
9871--10214	33	10.1	33	78	15	278	44	4	7	43	1.52
9922--10159	70	3.5	62	81	12	201	44	3	7	44	1.50
9983--10336	33	9.9	35	77	15	291	44	2	8	44	1.48
9914--10214	135	2.3	134	81	13	338	44	3	7	44	1.48
9983--10245	70	3.8	69	79	12	229	43	2	8	45	1.46
10343--10397	3	18.0	3	92	3	92	32	1	0	65	1.03
11499--11554	23	2.5	22	81	13	69	25	1	3	69	1.14
11504--11551	20	2.4	20	80	16	55	25	2	4	68	1.18
14629--14903	5	55.2	5	91	6	452	39	0	0	60	1.00
14958--14996	15	2.5	15	83	4	51	12	5	5	76	1.11
18895--19070	95	1.9	95	86	2	255	28	17	20	32	1.96
20262--21331	165	6.5	163	80	4	1047	31	24	19	24	1.98
20222--21331	84	13.4	82	79	5	1002	31	24	19	24	1.98
20222--21335	249	4.5	246	84	3	1213	31	24	19	24	1.98
21902--22177	37	8.1	34	73	20	188	46	4	6	43	1.48
21944--22176	35	7.0	33	71	21	157	47	5	5	42	1.48
22023--22080	26	2.2	26	90	3	89	46	5	6	41	1.53
21959--22297	131	2.6	128	83	11	413	45	4	6	43	1.49
22049--22262	69	3.2	68	75	20	229	44	4	5	45	1.46
21959--22262	131	2.3	130	85	10	417	46	4	5	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22119--22236	60	2.0	59	85	14	154	43	5	5	45	1.50
21997--22211	96	2.3	93	78	14	226	46	5	5	42	1.49
22206--22291	41	2.1	40	81	12	95	44	2	8	45	1.46
23321--23503	5	37.2	5	91	4	149	38	9	0	51	1.38
23465--23506	18	2.3	19	80	12	52	30	2	2	64	1.19
29629--29689	23	2.6	25	85	10	85	37	0	0	62	0.96
29648--29701	24	2.2	24	83	6	65	44	0	0	55	0.99
30406--30646	128	1.9	128	86	3	342	46	4	7	42	1.51
32705--32756	21	2.6	20	85	8	70	44	13	19	23	1.86
36203--36254	21	2.6	19	79	8	59	46	9	19	25	1.80
36321--36361	21	2.0	21	100	0	82	24	24	21	29	1.99
37088--37158	24	3.0	24	83	2	90	29	23	25	21	1.99
39917--39991	23	3.2	23	86	3	105	22	21	22	33	1.97
39928--39989	24	2.6	24	92	2	99	20	24	27	27	1.99
40279--40333	24	2.3	24	93	0	92	49	20	14	16	1.80
40549--40603	21	2.6	21	100	0	110	23	21	29	25	1.99
43999--44056	2	29.0	2	100	0	116	50	0	0	50	1.00
44483--44516	14	2.5	14	90	4	52	73	0	17	8	1.08
44510--44553	23	1.9	23	90	9	72	72	2	0	25	0.96
44599--44667	25	2.8	25	95	0	120	66	4	8	20	1.36
44764--44801	2	19.0	2	100	0	76	50	0	0	50	1.00
44812--44879	3	22.0	3	80	14	68	60	1	4	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46855--47058	110	1.9	110	86	2	293	24	18	21	35	1.95
48152--48193	15	2.7	15	82	13	50	2	16	2	78	0.96
50519--50557	18	2.2	18	90	0	60	20	48	17	12	1.80
50546--50579	15	2.3	15	94	0	59	17	35	23	23	1.95
51867--51901	18	1.9	18	88	0	52	48	2	20	28	1.63
53090--53157	24	2.8	24	93	0	109	25	14	19	41	1.89
53094--53167	24	3.1	24	88	0	94	27	12	20	40	1.87
53276--53367	43	2.1	43	95	0	166	17	10	35	35	1.85
63050--63083	13	2.5	14	95	4	61	73	0	17	8	1.08

Tables:   1

The End!