genome.fa.s6842.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006842.1 Hibiscus syriacus cultivar Beakdansim tig00017393_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133982

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3770--3833	31	2.0	32	84	3	85	14	28	31	26	1.95
10377--10498	32	3.8	32	83	2	147	29	13	22	34	1.92
10792--10968	64	2.8	65	92	3	306	34	21	14	29	1.93
11052--11722	227	2.9	226	87	4	927	33	23	15	26	1.95
11052--11722	114	5.8	114	88	4	886	33	23	15	26	1.95
11942--12224	84	3.4	84	81	5	304	35	19	18	26	1.95
12029--12255	84	2.7	84	82	4	228	33	21	19	25	1.97
13827--13861	14	2.5	14	85	0	52	17	2	8	71	1.23
17840--17884	14	3.1	15	84	6	58	64	17	6	11	1.46
17839--17895	24	2.4	24	93	0	96	63	15	8	12	1.52
19680--19721	19	2.4	19	84	11	54	21	28	11	38	1.89
19687--19722	19	2.0	19	89	10	58	19	27	11	41	1.85
19996--20514	2	257.0	2	70	18	294	42	7	2	47	1.45
20157--20226	15	4.9	14	73	16	54	32	5	5	55	1.47
20137--20210	7	10.6	7	74	11	53	35	4	6	54	1.46
23996--24049	27	2.2	24	84	15	67	55	25	11	7	1.61
47341--47365	11	2.3	11	100	0	50	32	8	24	36	1.84
47716--47776	20	3.1	19	84	13	79	55	9	16	18	1.67
47519--47990	181	2.6	182	87	2	648	43	12	16	26	1.85
47910--47948	20	2.0	20	85	10	53	61	2	15	20	1.45
50127--50191	21	3.1	21	93	0	103	41	10	30	16	1.83
50225--50290	33	2.0	33	90	0	105	28	0	48	22	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52080--52128	19	2.6	19	96	0	89	32	2	10	55	1.45
52246--54000	200	8.9	200	89	4	2710	36	14	18	30	1.90
52661--52702	21	2.0	21	81	9	50	47	21	11	19	1.81
53061--53102	21	2.0	21	86	9	59	45	21	14	19	1.85
54483--54527	21	2.1	21	91	0	72	31	11	6	51	1.63
59200--59262	33	1.9	33	96	3	119	52	19	4	23	1.65
59344--59672	68	4.9	68	78	5	319	51	8	8	30	1.63
59343--59672	132	2.5	132	82	4	340	52	8	8	30	1.62
80566--80805	40	5.8	39	75	14	182	44	13	5	37	1.66
80566--80901	129	2.6	127	81	7	389	43	13	5	38	1.67
80733--80903	86	2.0	89	83	5	224	42	11	5	40	1.66
82430--82467	7	5.6	7	87	6	60	26	28	28	15	1.96
82464--82496	5	6.8	5	86	6	50	3	21	54	21	1.58
82464--82496	14	2.3	15	94	5	59	3	21	54	21	1.58
82463--82505	19	2.3	19	83	0	50	6	25	48	18	1.73
83528--83714	39	4.8	39	78	7	202	43	12	6	37	1.68
83518--83714	78	2.5	77	84	4	245	44	12	7	36	1.70
83772--84162	58	6.8	57	80	8	398	43	12	6	36	1.70
83772--84162	172	2.3	173	83	7	456	43	12	6	36	1.70
84617--84661	14	3.2	13	84	12	54	55	8	2	33	1.43
84848--84887	14	2.9	14	84	0	53	32	32	12	22	1.91
87500--87526	14	1.9	14	100	0	54	66	14	11	7	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88991--89021	14	2.1	15	94	5	55	25	29	32	12	1.93
90326--90370	10	4.6	10	83	5	56	35	2	0	62	1.08
91391--91421	16	1.9	16	93	0	53	32	0	6	61	1.21
94662--94688	12	2.2	12	100	0	54	25	7	25	40	1.82
94691--94737	20	2.3	20	96	0	85	0	10	48	40	1.38
100323--100376	20	2.7	20	77	11	65	31	27	12	27	1.93
100400--100451	20	2.6	20	84	0	77	38	23	17	21	1.93
100439--100489	19	2.7	19	96	0	93	37	21	9	31	1.86
101235--101268	12	2.8	12	90	0	50	55	29	0	14	1.40
101394--101447	24	2.2	24	90	0	81	22	16	20	40	1.91
102523--102554	14	2.3	14	100	0	64	34	12	31	21	1.91
103723--103758	18	2.0	18	94	0	63	55	25	2	16	1.55
104870--104995	39	3.2	39	98	0	243	46	20	15	17	1.83
105259--105345	20	4.7	20	68	16	78	19	20	21	37	1.94
106926--107015	21	4.3	21	73	5	83	22	20	34	23	1.97
107165--107210	4	11.5	4	80	0	56	67	2	2	28	1.14
109445--109486	22	1.9	22	90	0	66	26	9	38	26	1.87
109617--109676	20	3.0	20	80	0	75	18	16	23	41	1.90
109617--109740	40	3.1	40	73	13	112	21	15	23	39	1.91
110091--110132	22	1.9	22	85	0	57	40	4	19	35	1.72
112922--112965	23	1.9	23	100	0	88	29	9	25	36	1.86
113937--113978	22	1.9	22	85	0	57	11	7	14	66	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116367--116397	2	15.5	2	100	0	62	48	0	0	51	1.00
117062--117088	2	13.5	2	100	0	54	48	0	0	51	1.00
121507--121572	16	4.0	16	86	7	96	42	0	0	57	0.98
121499--121569	5	14.4	5	77	16	69	42	0	0	57	0.98
121505--121571	34	2.0	32	91	5	107	43	0	0	56	0.99
121514--121582	33	2.2	33	82	10	81	42	2	1	53	1.24
121505--121571	2	37.5	2	73	21	60	43	0	0	56	0.99
121510--121596	34	2.5	34	80	14	97	42	3	1	52	1.25
122634--122705	30	2.5	28	78	10	83	33	2	2	61	1.25
122776--122811	2	19.0	2	88	11	58	50	0	0	50	1.00

Tables:   1

The End!