genome.fa.s6843.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006843.1 Hibiscus syriacus cultivar Beakdansim tig00017395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67233

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9129--9168	19	2.1	19	95	0	71	32	0	22	45	1.53
9472--9687	2	107.5	2	69	19	121	41	7	2	48	1.45
9475--9687	46	4.6	45	75	16	154	40	7	2	48	1.45
26822--26975	20	8.0	20	72	8	113	24	18	28	27	1.98
26820--26973	58	2.7	58	88	2	213	24	18	28	28	1.98
26881--26975	38	2.5	38	82	0	136	24	20	29	26	1.99
29049--29204	31	5.0	31	89	4	235	40	23	17	19	1.91
29861--30078	64	3.4	64	82	3	217	27	18	19	34	1.95
33257--33412	31	5.0	31	93	1	260	38	23	19	19	1.93
34069--34292	64	3.5	64	83	2	245	27	19	20	33	1.96
37514--37569	20	2.6	20	80	11	58	30	19	23	26	1.98
38896--38991	20	4.9	20	80	5	124	22	22	29	25	1.99
38894--39029	58	2.3	58	93	0	227	23	21	28	26	1.99
38896--39047	38	3.9	38	79	5	128	22	20	29	27	1.98
39985--40042	30	1.9	30	89	0	89	41	6	15	36	1.74
40233--40279	16	2.9	16	100	0	94	51	6	6	36	1.53
40992--41066	23	3.2	23	83	3	96	54	17	12	16	1.70
40997--41061	24	2.8	24	88	2	87	53	20	13	12	1.71
45351--45539	27	6.7	27	75	11	155	41	15	3	39	1.65
45551--45629	27	2.9	27	83	3	88	43	13	2	40	1.58
45467--45662	90	2.2	90	91	1	313	42	15	3	38	1.65
45351--45622	117	2.3	116	94	1	465	41	15	4	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48430--48490	32	1.9	32	96	0	113	45	3	1	49	1.28
48974--49033	25	2.4	25	91	5	95	31	8	5	55	1.51
49233--49603	191	2.0	189	89	3	575	39	13	8	38	1.76
49879--50042	85	1.9	85	83	2	213	25	21	20	32	1.98
65259--65303	21	2.1	21	87	0	63	31	28	24	15	1.96
66751--67035	147	1.9	148	94	4	502	28	16	21	34	1.94
67003--67047	23	2.0	23	90	0	72	22	26	26	24	2.00

Tables:   1

The End!