genome.fa.s6844.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006844.1 Hibiscus syriacus cultivar Beakdansim tig00017403_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127696

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10509--10571	27	2.4	27	86	5	85	42	31	25	0	1.55
11783--11882	21	4.8	21	78	2	94	29	29	16	26	1.96
11783--11882	42	2.4	42	83	3	121	29	29	16	26	1.96
20141--20231	19	4.4	20	76	17	105	38	5	26	29	1.79
20660--20783	20	6.2	20	94	0	214	26	18	29	25	1.98
20660--20843	40	4.6	39	81	6	210	26	17	28	27	1.98
20798--20903	20	5.3	20	70	5	72	25	15	28	31	1.95
20753--20881	60	2.2	59	92	1	222	25	17	27	29	1.97
33595--33856	82	3.2	82	93	1	436	17	20	25	37	1.94
33595--33856	41	6.4	41	88	3	393	17	20	25	37	1.94
33828--33912	20	4.3	19	74	12	73	16	21	21	41	1.90
33996--34022	6	4.5	6	100	0	54	33	51	14	0	1.43
34610--34997	41	9.5	41	87	3	541	36	24	20	18	1.95
34885--34990	20	5.2	20	67	12	63	35	26	19	17	1.95
46130--46163	17	2.0	17	100	0	68	23	23	23	29	1.99
47687--47770	8	11.2	8	70	23	58	77	1	13	8	1.05
47690--47780	13	6.9	13	85	6	112	74	1	15	8	1.11
47690--47749	21	2.9	21	80	11	70	78	1	13	6	1.02
48649--48996	136	2.6	136	92	0	563	34	17	22	24	1.96
48916--49087	91	1.9	91	91	0	281	39	16	21	22	1.92
48786--49219	226	1.9	224	89	3	667	36	17	21	24	1.95
50254--50283	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51355--51488	59	2.3	59	89	0	196	28	19	24	27	1.99
54852--55264	215	1.9	215	88	0	628	38	16	21	23	1.93
60858--60914	16	3.6	16	95	0	105	57	21	12	8	1.61
63291--63431	71	2.0	73	92	2	241	19	27	15	37	1.92
63523--63677	31	5.0	31	88	0	220	26	22	12	38	1.89
63710--63768	28	2.1	28	96	0	109	23	18	23	33	1.97
64343--64543	100	2.0	100	93	0	339	53	12	14	19	1.73
67360--67420	27	2.3	27	82	5	70	40	1	1	55	1.19
67353--67421	30	2.4	27	75	15	68	44	2	1	50	1.25
67487--67573	42	2.1	42	82	4	104	41	1	2	55	1.20
67678--67734	24	2.3	23	85	11	69	47	1	3	47	1.29
91474--91537	22	3.0	21	86	4	92	26	23	26	23	2.00
92828--92988	64	2.5	63	85	8	200	26	21	18	33	1.96
92958--93009	18	2.8	20	91	8	83	19	30	23	26	1.98
96257--96320	22	3.0	21	88	4	101	25	23	28	23	2.00
97609--97769	64	2.5	63	85	8	200	26	21	18	33	1.96
101312--101352	21	2.0	21	85	0	55	46	4	21	26	1.72
109744--109817	8	9.2	8	98	0	121	50	8	0	41	1.32
109747--109817	2	35.5	2	85	0	97	50	7	0	42	1.29
110901--110958	27	2.0	27	83	9	71	46	1	3	48	1.29

Tables:   1

The End!