genome.fa.s6845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006845.1 Hibiscus syriacus cultivar Beakdansim tig00017404_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169584

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5216--5260	20	2.3	20	96	3	83	33	17	11	37	1.85
10258--10286	2	14.5	2	100	0	58	51	0	0	48	1.00
16404--16462	31	1.9	31	92	0	100	40	6	10	42	1.65
16495--16575	18	4.5	18	68	25	55	53	9	1	35	1.42
16477--17109	54	11.8	54	81	13	556	51	10	0	37	1.40
16563--16670	32	3.7	32	73	23	128	52	11	0	36	1.37
16604--16749	79	1.8	79	94	0	256	51	14	0	33	1.47
16696--16952	32	8.7	32	80	17	322	51	11	0	36	1.44
16823--16865	22	2.0	22	100	0	86	51	13	0	34	1.42
16825--16873	22	2.2	22	88	3	71	55	14	0	30	1.40
17002--17156	15	9.5	15	71	21	107	50	3	0	45	1.17
19677--19722	23	2.0	24	83	12	60	41	0	34	23	1.55
26042--26109	34	2.0	34	100	0	136	35	32	8	23	1.86
26903--26949	23	2.1	22	84	4	58	36	10	19	34	1.86
27428--27490	23	2.7	23	92	0	99	38	19	4	38	1.73
27911--27973	23	2.7	23	92	0	99	38	20	4	36	1.74
28394--28456	23	2.7	23	92	0	99	38	20	4	36	1.74
28875--28937	23	2.7	23	90	0	90	38	19	6	36	1.77
29355--29417	23	2.7	23	92	0	99	38	20	4	36	1.74
29835--29890	23	2.4	23	90	0	94	37	21	5	35	1.76
30318--30380	23	2.7	23	92	0	99	38	20	4	36	1.74
27023--32057	481	10.5	482	97	0	9390	40	10	7	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27023--32057	963	5.2	964	97	0	9433	40	10	7	41	1.68
30800--30862	23	2.7	23	92	0	99	38	17	4	39	1.71
31280--31335	23	2.4	23	90	0	94	37	21	5	35	1.76
31762--31817	23	2.4	23	90	0	94	37	21	5	35	1.76
31857--32565	228	3.1	228	95	1	1282	39	7	7	44	1.62
33971--34427	228	2.0	230	95	2	828	17	25	12	44	1.84
34676--34719	2	22.0	2	100	0	88	50	0	0	50	1.00
48226--48293	16	4.2	16	80	0	73	22	20	11	45	1.83
48566--48609	23	1.9	23	100	0	88	45	0	4	50	1.22
48779--48830	7	7.4	7	86	0	50	17	0	25	57	1.40
48773--48830	21	2.8	21	78	0	62	18	0	25	55	1.43
48831--48932	49	2.1	48	80	5	107	36	9	5	48	1.61
49292--49370	21	3.8	21	77	3	70	21	1	29	48	1.58
49292--49344	7	7.6	7	82	0	52	18	0	30	50	1.47
50423--50491	35	1.9	36	91	2	113	21	28	28	20	1.98
50877--50944	7	9.7	7	76	17	70	25	0	27	47	1.53
50873--50944	14	5.1	14	88	6	110	25	0	27	47	1.52
51173--51332	2	82.0	2	68	20	81	43	5	3	48	1.40
51257--51327	25	2.9	23	76	12	70	39	5	2	52	1.40
51362--51569	104	2.0	104	100	0	416	52	7	12	26	1.66
51628--51684	19	2.9	20	81	5	80	26	24	0	49	1.51
51623--51682	20	3.0	20	80	4	77	28	25	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51811--51855	15	3.1	15	75	12	58	42	8	4	44	1.56
51897--51932	18	2.1	17	94	5	63	50	0	5	44	1.25
53616--53652	18	2.1	18	90	5	58	21	5	16	56	1.59
61252--62099	188	4.5	186	90	3	1202	27	22	19	29	1.98
70340--70426	30	2.9	30	78	8	88	42	3	17	36	1.66
78931--78964	2	17.5	2	93	6	61	50	0	0	50	1.00
83667--83708	20	2.1	20	90	0	66	33	21	14	30	1.93
85062--85158	32	3.0	32	96	1	176	47	9	11	31	1.71
85129--85174	22	2.0	22	84	12	58	41	15	4	39	1.67
91625--91670	21	2.1	21	84	4	56	50	10	13	26	1.74
92230--92691	111	4.1	111	90	0	672	26	13	13	46	1.80
92230--92691	223	2.1	223	88	1	683	26	13	13	46	1.80
94480--94565	45	1.9	45	90	0	136	34	9	27	27	1.88
97276--97458	90	2.0	90	97	0	348	16	16	14	51	1.76
109940--110010	30	2.4	30	97	0	133	35	28	26	9	1.88
110179--110228	18	2.8	18	96	0	91	42	6	24	28	1.78
110796--110913	37	3.3	36	88	9	172	37	36	11	15	1.83
110866--110983	61	1.9	62	84	8	161	39	32	12	15	1.85
117897--117931	13	2.8	13	91	4	54	57	0	0	42	0.99
120633--120721	34	2.7	31	81	6	97	59	2	0	38	1.10
120633--120712	34	2.4	33	83	8	101	61	1	0	37	1.04
120668--120742	33	2.2	34	80	13	84	64	5	0	30	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123247--123313	35	1.9	34	93	3	116	44	20	4	29	1.71
123299--123385	37	2.4	37	96	3	160	31	16	12	40	1.85
126889--126923	12	2.8	13	91	8	56	31	2	25	40	1.70
127068--127100	15	2.2	15	94	0	57	15	21	33	30	1.94
133786--133821	12	3.0	12	87	0	54	30	8	25	36	1.85
136879--136948	37	1.9	36	91	2	113	44	18	5	31	1.73
136878--136955	36	2.2	36	86	4	113	41	20	5	33	1.74
136881--136990	35	3.1	35	81	3	105	44	16	3	35	1.65
147030--147074	21	2.1	21	84	8	56	33	22	17	26	1.96
149231--149338	42	2.6	42	100	0	216	42	10	10	37	1.73
149695--149767	23	3.2	23	92	0	119	34	5	21	38	1.77
150184--150256	23	3.2	23	88	0	110	34	5	20	39	1.76
149354--151138	489	3.7	485	94	2	3169	41	7	10	40	1.69
150663--150734	23	3.1	23	89	0	108	36	5	20	37	1.76
162883--162916	12	2.8	12	90	4	50	29	2	0	67	1.05

Tables:   1

The End!