genome.fa.s6847.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006847.1 Hibiscus syriacus cultivar Beakdansim tig00017408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68995

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1672--1781	57	1.9	58	92	1	186	30	29	10	30	1.90
8076--8117	2	21.0	2	100	0	84	50	0	0	50	1.00
8554--8580	14	1.9	14	100	0	54	51	11	0	37	1.37
11345--11392	23	2.1	23	100	0	96	35	12	16	35	1.87
22466--22515	20	2.5	20	78	12	59	40	4	2	54	1.31
22452--22519	31	2.2	31	86	2	91	41	2	2	52	1.31
23248--23329	11	8.1	10	72	20	55	52	3	0	43	1.18
23244--23329	30	2.8	30	76	13	86	52	3	0	44	1.18
23248--23296	20	2.6	19	87	12	66	53	2	0	44	1.12
23248--23300	21	2.6	21	80	14	58	54	1	0	43	1.11
23253--23329	30	2.5	32	79	8	97	51	3	0	44	1.19
23898--23959	13	4.5	13	73	25	56	62	0	1	35	1.05
23904--23995	24	3.6	25	74	23	77	61	0	2	35	1.08
24069--24106	11	3.5	11	85	10	51	60	0	0	39	0.97
24071--24105	14	2.5	14	86	13	54	60	0	0	40	0.97
24277--24320	18	2.4	18	92	0	70	20	45	2	31	1.64
26466--26519	22	2.5	22	100	0	108	51	7	3	37	1.48
41205--41241	2	19.5	2	86	10	51	45	0	0	54	1.00
47379--47490	37	3.2	35	79	10	104	35	4	16	42	1.69
51990--52050	21	3.2	21	65	29	64	31	4	21	42	1.74
51982--52100	35	3.3	37	88	8	174	31	5	19	43	1.72
59051--59117	27	2.5	27	87	4	91	58	1	1	38	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60903--60996	30	3.2	30	79	11	81	50	1	1	47	1.15
60914--61000	14	6.2	14	69	9	52	47	1	1	50	1.16
60928--60996	28	2.5	28	74	6	70	49	1	1	47	1.19
61076--61498	182	2.3	182	92	0	686	28	15	12	43	1.83
61370--61871	112	4.5	112	93	0	853	24	15	14	45	1.83
61370--62032	224	3.0	222	89	5	970	25	14	14	45	1.83
61768--61964	93	2.1	93	97	0	369	23	15	13	47	1.81
61656--62032	205	1.8	204	92	2	641	25	13	13	47	1.80
67289--67342	21	2.6	21	96	0	99	25	16	27	29	1.97
67381--67434	22	2.5	22	93	0	99	16	16	27	38	1.90
68836--68861	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!