genome.fa.s6848.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006848.1 Hibiscus syriacus cultivar Beakdansim tig00017415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62605

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2514--2577	23	2.8	23	85	0	92	26	25	28	20	1.99
5992--6037	15	3.0	16	81	9	51	54	2	0	43	1.12
6036--6087	15	3.6	14	75	17	52	63	3	0	32	1.12
6001--6087	30	2.9	30	79	6	86	59	2	0	37	1.10
11505--11545	21	2.0	21	95	0	73	24	9	26	39	1.86
11545--11593	24	2.1	24	88	3	73	14	20	22	42	1.88
15461--15773	20	15.4	20	78	7	256	38	24	18	18	1.93
15461--15754	121	2.4	122	86	1	401	38	24	18	18	1.93
16577--16623	24	2.0	24	95	0	85	27	21	17	34	1.95
19168--19349	33	5.3	33	80	11	213	43	19	21	14	1.87
19183--19316	19	7.5	19	70	18	90	44	19	20	15	1.87
19154--19349	73	2.8	66	78	12	214	44	19	21	14	1.86
19142--19351	106	2.0	106	85	3	289	43	19	21	15	1.88
19359--19427	33	2.1	33	86	0	93	11	18	18	50	1.76
19526--19562	14	2.6	14	91	0	65	45	21	0	32	1.52
20955--21038	42	2.0	42	85	0	114	23	16	38	21	1.93
21886--21982	20	4.7	20	73	12	88	20	16	24	38	1.93
21891--21982	41	2.2	42	86	5	125	19	16	25	39	1.92
21991--22043	20	2.7	20	91	5	81	13	18	24	43	1.86
25420--25551	59	2.2	59	82	9	153	39	12	11	36	1.80
33471--33522	21	2.5	21	81	3	61	38	19	25	17	1.93
33511--33611	20	5.0	20	82	7	114	32	24	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33508--33624	61	1.9	61	85	0	162	33	23	18	23	1.97
33573--33625	20	2.7	20	90	0	79	24	26	20	28	1.99
34168--34209	19	2.2	19	86	0	57	50	28	16	4	1.66
34205--34349	19	8.1	19	76	16	148	11	23	20	44	1.84
34205--34341	52	2.6	52	92	1	220	11	23	21	43	1.85
34260--34324	33	2.0	33	93	0	112	10	24	23	41	1.86
34798--34828	15	2.1	15	100	0	62	25	41	6	25	1.79
35817--35947	63	2.1	63	100	0	262	20	18	37	23	1.94
36520--36722	42	4.8	42	78	2	185	23	36	17	22	1.94
36517--36692	84	2.1	84	97	0	334	22	38	16	23	1.93
36656--36722	21	3.2	21	66	6	55	23	35	20	19	1.95
36517--36722	84	2.5	84	91	1	288	22	36	17	22	1.94
38081--38116	14	2.6	14	95	0	63	30	0	25	44	1.54
38241--38297	14	3.7	14	75	20	60	43	22	24	8	1.81
38223--38312	33	2.7	33	94	0	153	43	21	22	13	1.87
38223--38283	19	3.5	19	74	21	69	44	21	22	11	1.84
38308--38458	19	8.7	19	69	21	107	16	21	19	43	1.88
38312--38438	33	3.9	32	86	8	184	15	22	18	43	1.88
38305--38437	66	2.0	66	94	2	232	17	21	18	42	1.90
40730--40754	12	2.1	12	100	0	50	0	28	0	72	0.86
42039--42096	20	2.9	20	97	0	107	37	24	22	15	1.93
42115--42182	19	3.8	19	85	12	92	13	20	17	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42179--42215	19	1.9	19	94	0	65	13	21	24	40	1.89
44204--44299	20	5.3	19	79	14	78	42	22	21	12	1.87
44256--44313	14	3.9	14	81	16	71	50	24	17	8	1.74
44240--44318	32	2.4	33	93	2	133	48	22	18	10	1.78
44347--44404	14	3.9	14	79	16	71	8	15	25	50	1.73
44330--44420	32	2.8	33	94	3	166	10	17	23	48	1.79
44405--44448	20	2.2	20	88	4	63	18	25	20	36	1.95
44414--44459	20	2.3	20	84	0	56	17	21	23	36	1.94
44935--44979	18	2.5	18	88	0	72	13	15	44	26	1.83
46299--46357	20	3.0	20	84	0	64	44	22	16	16	1.87
46620--46663	22	2.0	22	95	0	79	18	15	45	20	1.85
46851--46923	20	3.7	20	92	0	119	26	19	28	26	1.98
46831--46966	41	3.3	41	77	6	141	24	16	25	33	1.95
46959--47029	21	3.4	21	80	3	99	15	23	18	42	1.88
46973--47046	20	3.7	20	80	3	94	17	22	18	40	1.91
46956--47046	41	2.2	41	100	0	182	17	24	18	39	1.92
47848--47873	13	2.0	13	100	0	52	69	0	0	30	0.89
49146--49210	33	2.0	32	87	3	94	40	7	18	33	1.79
49183--49809	71	8.9	70	80	6	585	39	9	21	30	1.84
49250--49387	37	3.9	36	71	8	104	38	11	21	28	1.88
49442--49630	34	5.4	34	71	9	121	41	10	21	26	1.85
49183--49783	209	2.9	210	81	7	652	39	9	21	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49464--49800	37	9.5	37	69	13	183	39	9	21	29	1.85
49254--49809	280	2.0	279	82	4	690	39	9	21	29	1.85
50102--50199	46	2.1	46	81	7	110	51	9	17	22	1.73
56669--56918	138	1.8	139	84	4	344	39	15	17	28	1.90
58978--59020	22	2.0	22	90	4	70	25	41	20	11	1.86

Tables:   1

The End!