Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006849.1 Hibiscus syriacus cultivar Beakdansim tig00017417_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81168

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
455--507
18
2.9
18
97
0
97
54
7
16
20
1.66
1128--1234
19
5.6
19
84
0
124
40
14
5
39
1.70
1128--1230
38
2.7
38
89
0
161
39
14
5
39
1.70
7912--8126
100
2.2
99
83
8
258
36
15
12
35
1.85
16896--17025
64
2.0
65
92
1
217
36
18
19
26
1.94
17879--17919
2
20.5
2
100
0
82
51
0
0
48
1.00
18980--19037
21
2.8
21
89
0
89
31
27
18
22
1.97
19080--19138
21
2.8
22
69
7
59
40
25
13
20
1.89
19940--20009
35
2.0
35
86
5
97
28
30
15
25
1.96
24072--24105
2
17.0
2
100
0
68
50
0
0
50
1.00
27902--27940
19
2.1
19
86
13
55
58
5
5
30
1.41
30234--30278
21
2.1
21
91
0
72
35
15
0
48
1.45
30298--30370
21
3.4
22
83
9
105
63
12
10
13
1.53
34668--34785
50
2.3
52
77
8
132
40
13
19
26
1.89
34683--34782
50
2.0
50
86
0
137
44
15
15
26
1.85
36405--36657
137
1.8
137
92
3
429
23
16
14
45
1.85
36550--36991
112
3.9
112
94
0
767
23
14
14
46
1.82
36550--36991
225
2.0
224
94
0
776
23
14
14
46
1.82
37479--37523
22
2.1
21
84
8
56
53
2
4
40
1.33
37592--37628
2
18.5
2
100
0
74
51
0
0
48
1.00
37774--37884
39
2.8
39
77
12
120
44
1
19
34
1.62
39116--39140
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39566--39594
2
14.5
2
100
0
58
48
0
0
51
1.00
43063--43087
3
8.3
3
100
0
50
64
0
0
36
0.94
45240--45302
18
3.6
17
76
17
58
58
0
0
41
0.98
47528--47613
31
2.8
31
83
1
93
33
24
17
24
1.96
47542--47665
31
4.0
31
78
6
124
32
20
17
29
1.96
47573--47662
32
2.9
31
77
14
103
31
20
16
32
1.95
48498--48660
64
2.5
65
79
7
179
23
23
20
32
1.98
52157--52280
31
4.0
31
73
13
85
33
20
17
29
1.95
62863--62888
12
2.2
12
100
0
52
50
11
38
0
1.39
63758--63797
21
1.9
21
84
0
53
42
15
2
40
1.60
64121--64255
45
3.0
45
91
1
209
32
22
6
38
1.80
68310--68371
16
3.8
16
95
2
106
19
8
37
35
1.81
69866--69914
19
2.4
20
76
13
55
28
10
2
59
1.41
76126--76167
14
2.7
15
82
14
50
54
0
0
45
0.99
79086--79119
15
2.3
15
94
0
59
32
0
20
47
1.51
79201--79542
117
2.9
117
87
1
474
23
22
21
31
1.98
79428--80166
134
5.5
137
88
6
1077
23
21
22
32
1.98
79428--80166
266
2.7
274
88
6
1113
23
21
22
32
1.98
80215--80339
63
2.0
61
89
3
187
40
0
22
36
1.60
80405--80435
14
2.2
14
100
0
62
25
0
16
58
1.38
81102--81152
21
2.5
21
80
3
68
27
25
29
17
1.98

Tables:   1

The End!