genome.fa.s685.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000685.1 Hibiscus syriacus cultivar Beakdansim tig00001338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141874

Tables:   1   

This is table  1  of  1  ( 120 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6256--6541	86	3.3	86	89	0	419	31	24	22	21	1.98
7841--7879	18	2.2	18	90	0	60	20	7	0	71	1.10
8030--8056	14	1.9	14	100	0	54	7	0	3	88	0.61
8181--8225	11	4.2	11	80	2	56	20	0	2	77	0.87
8180--8224	16	2.8	16	80	12	56	22	0	2	75	0.91
8181--8227	5	9.0	5	78	17	51	21	0	2	76	0.89
8587--8741	30	5.2	29	77	7	143	38	8	1	51	1.43
8738--8783	24	1.9	24	86	0	65	50	2	0	47	1.13
8762--8839	30	2.6	31	86	7	101	42	3	0	53	1.19
8587--8869	59	4.9	59	73	15	205	39	7	1	51	1.38
8990--9064	30	2.5	29	82	8	87	45	1	6	46	1.37
10405--10453	17	2.8	18	87	3	73	34	8	28	28	1.86
13408--13461	20	2.7	20	94	0	90	25	16	20	37	1.93
16724--16757	16	2.1	16	94	0	59	32	8	26	32	1.87
23680--23833	44	3.5	43	71	14	136	57	9	1	30	1.42
23655--23831	87	2.0	87	93	0	300	57	10	1	30	1.42
24542--24572	2	15.5	2	100	0	62	48	0	0	51	1.00
25413--25469	23	2.4	24	85	2	71	52	5	3	38	1.41
26977--27037	27	2.3	27	88	2	88	21	31	14	32	1.93
37649--37737	2	44.5	2	100	0	178	49	0	0	50	1.00
39848--39898	26	2.0	26	100	0	102	27	19	15	37	1.92
42108--42247	36	3.9	35	84	6	183	19	21	19	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42114--42252	72	1.9	71	90	7	219	17	21	18	41	1.90
47717--47751	12	2.9	12	86	0	52	85	0	2	11	0.69
52850--52883	3	11.7	3	93	6	61	70	0	0	29	0.87
52848--52902	13	4.2	12	78	15	56	76	0	0	23	0.79
52847--52885	9	4.6	8	93	6	60	71	0	0	28	0.86
53697--53776	3	26.7	3	76	16	60	67	0	0	32	0.91
55089--55164	3	25.7	3	78	15	54	65	0	0	34	0.93
55767--55853	32	2.7	32	100	0	174	20	20	22	35	1.96
55914--56118	106	1.9	106	86	2	286	22	20	24	32	1.97
56191--56515	106	3.1	105	90	4	521	21	18	24	35	1.96
55850--56409	280	2.0	280	92	0	924	22	18	24	34	1.96
57233--57350	38	3.1	39	79	6	125	37	12	22	27	1.90
57790--57825	18	2.0	18	94	0	63	41	33	8	16	1.78
58865--58950	17	4.7	18	75	16	52	0	17	6	75	1.01
58891--58967	36	2.1	36	87	0	109	1	19	6	72	1.13
61953--62054	9	10.7	10	77	16	53	65	0	6	27	1.18
62005--62050	3	15.3	3	90	0	74	67	0	2	30	1.03
62856--62880	13	1.9	13	100	0	50	88	0	0	12	0.53
62861--62939	3	27.3	3	75	16	69	69	0	0	30	0.89
67033--67126	15	7.0	15	68	24	66	41	1	1	56	1.13
67043--67115	26	2.9	27	82	13	93	45	0	1	53	1.09
67068--67151	40	2.2	37	85	10	107	44	1	1	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67040--67172	64	2.1	64	95	2	241	42	0	1	54	1.14
67079--67175	21	4.7	20	68	21	56	42	1	2	54	1.19
67840--67898	31	1.9	31	92	0	100	44	8	5	42	1.57
68484--68556	16	4.9	15	75	12	71	60	0	1	38	1.06
68476--68556	24	3.2	24	79	13	76	60	0	1	38	1.05
72297--72345	20	2.5	19	83	9	62	73	8	0	18	1.07
72670--72708	18	2.0	18	85	14	51	46	0	0	53	1.00
72781--72864	16	5.3	16	76	13	66	35	1	2	60	1.17
72786--72870	13	6.7	13	70	22	56	35	0	2	62	1.08
74928--75337	195	2.1	193	80	3	448	39	11	12	36	1.80
77058--77270	104	2.0	105	83	8	267	34	5	12	47	1.64
77237--77341	55	2.0	52	90	9	169	40	3	3	52	1.38
80169--80326	21	7.8	20	70	7	77	39	25	16	18	1.91
80313--80486	20	8.6	20	82	5	208	35	26	18	19	1.95
80293--80486	40	4.8	40	82	3	113	36	25	18	19	1.94
80313--80486	60	2.9	60	84	0	240	35	26	18	19	1.95
80868--80937	33	2.2	33	89	2	106	11	22	18	47	1.81
81045--81111	33	2.0	33	91	0	107	46	23	20	8	1.79
81107--81204	19	5.7	19	70	22	90	10	23	22	43	1.83
81129--81218	14	5.7	14	72	23	72	8	24	23	43	1.82
81112--81226	33	3.5	33	97	0	221	9	23	20	46	1.80
83126--83158	17	1.9	17	88	11	50	24	15	15	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82917--83292	92	4.1	93	97	1	711	21	12	19	46	1.83
83340--83468	19	7.3	19	73	17	116	46	28	16	8	1.76
83376--83468	33	2.8	32	91	4	150	46	27	18	7	1.76
83340--83468	52	2.5	52	73	14	131	46	28	16	8	1.76
83464--83580	19	6.8	18	79	16	108	10	20	22	47	1.80
83481--83559	14	4.9	15	74	22	72	10	21	21	46	1.80
83469--83559	32	2.8	32	91	5	148	10	20	20	47	1.80
83531--83596	19	3.4	19	87	6	89	10	16	27	45	1.80
85517--85552	14	2.6	14	95	0	63	33	0	22	44	1.53
85659--85775	19	6.4	19	87	10	181	46	17	21	14	1.84
85659--85775	33	3.2	36	84	13	159	46	17	21	14	1.84
85677--85793	53	2.2	53	95	1	209	44	17	23	14	1.86
85800--85951	33	4.5	33	73	17	150	13	23	17	45	1.84
85822--86037	19	12.4	19	75	20	231	14	21	17	46	1.84
85800--86009	52	4.0	52	97	1	395	14	23	16	45	1.84
85841--86051	33	6.2	33	77	13	232	13	22	18	45	1.84
88289--88313	12	2.1	12	100	0	50	0	28	0	72	0.86
89213--89442	20	11.5	20	85	3	230	20	18	24	36	1.94
89409--89506	21	4.8	20	75	15	83	22	17	22	37	1.94
89409--89507	42	2.4	43	78	8	107	22	17	23	37	1.94
102549--102641	22	4.5	21	73	17	63	77	0	17	5	0.95
102560--102600	19	2.1	20	86	13	59	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102549--102592	21	2.1	21	87	8	63	77	0	20	2	0.88
106133--106252	63	1.9	63	83	6	154	41	8	7	42	1.63
106226--106292	34	2.0	34	82	11	84	40	5	7	46	1.57
111805--111831	2	13.5	2	100	0	54	51	0	0	48	1.00
113169--113202	17	2.0	17	94	0	59	26	5	29	38	1.80
115334--115369	19	1.9	18	88	5	54	47	2	19	30	1.64
116470--116503	17	1.9	17	88	5	50	82	0	17	0	0.67
116957--117067	1	111.0	1	65	0	51	82	0	17	0	0.66
116954--117079	5	24.4	5	83	13	150	81	0	18	0	0.69
116957--117079	16	7.9	15	83	11	142	82	0	17	0	0.68
116954--117079	21	6.1	21	84	9	170	81	0	18	0	0.69
117820--118015	82	2.4	80	80	5	223	33	15	22	28	1.95
117964--118067	51	2.0	51	88	0	154	36	18	25	20	1.94
119626--119954	130	2.5	130	93	1	552	26	19	20	33	1.97
119823--120320	214	2.3	216	85	6	657	29	19	18	32	1.96
121749--121780	15	2.1	16	88	11	50	28	0	3	68	1.04
126124--126303	92	2.0	91	87	5	265	23	22	13	40	1.90
126364--126647	105	2.7	105	89	0	442	21	21	16	40	1.91
128714--128791	10	7.6	10	74	20	56	0	20	2	76	0.90
128721--128827	8	12.5	8	72	15	72	2	18	1	76	1.00
128716--128858	17	8.1	17	72	14	94	4	17	1	76	1.01
128726--128808	19	4.6	18	78	13	98	0	20	2	77	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128721--128807	27	3.3	26	77	16	92	0	20	2	77	0.89
128726--128816	36	2.5	37	82	7	107	1	19	2	76	0.95
128777--128852	24	3.2	24	75	14	61	6	17	0	76	0.99
128741--128827	35	2.5	32	78	12	84	3	18	2	75	1.04
128726--128838	36	3.1	36	81	7	95	3	17	1	76	1.01
128797--128872	13	5.6	13	72	21	59	10	10	0	78	0.95
132252--132281	2	15.0	2	100	0	60	50	0	0	50	1.00
140819--140882	26	2.5	26	84	2	76	7	25	9	57	1.56
140836--140911	26	3.0	26	81	7	77	3	27	7	60	1.42
141422--141469	3	16.0	3	100	0	96	66	0	0	33	0.92

Tables:   1

The End!