Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006853.1 Hibiscus syriacus cultivar Beakdansim tig00017435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95886

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18275--18305
2
15.5
2
93
0
53
48
3
0
48
1.17
18497--18574
33
2.4
33
87
4
106
25
29
35
8
1.87
18631--18705
24
3.3
22
76
14
73
12
22
37
28
1.90
18645--18688
10
4.4
10
82
0
61
9
22
38
29
1.85
18768--18850
29
2.9
29
100
0
166
10
24
44
20
1.83
30381--30419
2
20.0
2
94
5
71
51
0
0
48
1.00
42273--42419
53
2.8
53
94
1
251
19
25
22
31
1.98
42785--42877
40
2.3
41
83
10
111
37
23
16
22
1.93
42786--42999
42
5.2
42
70
15
146
33
22
17
27
1.96
42923--43014
42
2.2
42
96
0
166
31
21
22
23
1.98
43127--43233
42
2.6
41
80
2
133
28
22
23
25
1.99
42923--43564
214
3.0
214
93
0
1070
31
18
15
34
1.93
43346--43447
42
2.5
41
79
3
123
29
23
23
23
1.99
44624--46063
720
2.0
720
100
0
2880
30
20
13
35
1.91
56712--56758
24
1.9
25
86
4
69
38
10
21
29
1.87
60292--60434
69
2.1
69
89
0
214
41
23
11
23
1.87
60694--61114
211
2.0
211
100
0
842
19
18
28
33
1.95
66079--66106
3
9.3
3
100
0
56
0
32
0
67
0.91
72343--72376
6
5.7
6
96
0
50
32
44
0
23
1.54
73524--73567
22
2.0
22
86
4
61
43
4
4
47
1.44
73887--74098
102
2.1
102
88
0
316
25
29
21
24
1.99
74864--74986
37
3.4
37
71
11
92
34
32
9
23
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79519--79598
3
26.7
3
100
0
160
66
0
33
0
0.92
86698--86763
31
2.1
31
94
0
114
46
15
12
25
1.80
95640--95677
20
1.9
20
88
0
58
36
26
13
23
1.91

Tables:   1

The End!