Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006854.1 Hibiscus syriacus cultivar Beakdansim tig00017440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65219

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2124--2183
31
1.9
31
86
0
84
30
6
18
45
1.75
10721--10762
21
2.0
20
86
4
57
38
14
7
40
1.73
10934--10975
21
2.0
20
86
4
57
38
14
7
40
1.73
10668--11093
213
2.0
213
98
0
825
31
19
9
38
1.85
14411--14444
15
2.3
15
100
0
68
50
11
20
17
1.77
20745--20786
21
2.0
20
86
4
57
38
14
7
40
1.73
25487--25515
2
14.5
2
100
0
58
48
0
0
51
1.00
26129--26259
60
2.2
60
74
9
131
33
12
19
34
1.90
27233--27274
21
2.0
21
100
0
84
42
9
33
14
1.78
27552--27685
66
2.0
65
91
1
214
37
16
27
18
1.92
29662--29697
17
2.1
17
94
0
63
11
22
44
22
1.84
29667--29721
22
2.4
24
87
6
78
9
21
49
20
1.76
29668--29723
19
2.8
19
86
8
67
10
21
48
19
1.79
32768--32806
2
19.5
2
100
0
78
51
0
0
48
1.00
34841--35001
60
2.7
60
81
6
184
33
19
6
40
1.76
35133--35306
60
2.9
59
83
5
215
43
5
20
31
1.75
47213--47252
15
2.6
15
84
4
53
70
10
2
17
1.27
55540--55698
32
5.0
32
77
0
165
28
23
27
20
1.99
55540--55741
96
2.1
96
96
0
368
27
23
27
20
1.99
55540--55741
32
6.3
32
75
0
143
27
23
27
20
1.99
56836--56902
27
2.4
28
90
5
109
20
10
25
43
1.84
60164--60206
16
2.7
16
82
10
52
53
0
4
41
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60615--60652
11
3.5
11
82
7
51
18
2
18
60
1.48
61061--61399
43
7.9
43
86
3
407
32
19
24
24
1.98
64707--64837
40
3.3
39
81
11
133
32
19
21
26
1.97
64726--64930
40
5.3
39
76
14
149
34
18
19
28
1.95
64726--64970
77
3.1
76
76
10
192
33
19
18
28
1.95

Tables:   1

The End!