genome.fa.s6858.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006858.1 Hibiscus syriacus cultivar Beakdansim tig00017449_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109664

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8194--8237	2	22.5	2	95	4	81	52	0	0	47	1.00
11473--11620	36	4.1	37	78	3	151	47	7	14	29	1.72
11776--12010	97	2.4	97	85	3	323	41	9	18	30	1.82
12447--12491	18	2.5	18	92	0	81	15	20	13	51	1.76
17533--17572	18	2.1	19	86	9	55	55	5	20	20	1.62
18714--18750	19	1.9	19	94	0	65	43	13	18	24	1.86
19132--19415	47	6.1	47	88	2	410	43	11	21	23	1.85
19165--19299	27	5.5	26	66	28	82	41	10	23	24	1.85
19192--19312	20	5.3	20	68	27	64	42	9	23	23	1.84
25469--25519	21	2.4	22	93	3	86	31	13	21	33	1.92
25597--25634	20	1.9	20	84	10	51	42	7	23	26	1.81
26076--26149	20	3.7	20	92	0	121	39	12	28	20	1.88
26136--26221	27	3.4	27	66	26	80	40	12	24	22	1.89
26116--26510	47	8.7	47	83	10	527	41	12	23	22	1.87
26017--26510	94	5.5	95	83	11	614	41	11	23	22	1.87
26231--26356	27	5.2	27	64	24	100	41	14	23	21	1.89
26037--26482	47	10.1	41	75	16	221	41	12	24	22	1.87
26411--26466	20	2.8	21	78	13	64	37	14	30	17	1.90
28226--28264	13	3.1	13	85	3	53	41	7	12	38	1.72
29491--29687	55	3.5	55	82	4	227	40	13	16	29	1.87
29861--29923	31	2.0	31	90	0	99	31	12	23	31	1.92
29892--30029	56	2.5	56	90	3	208	37	15	19	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30654--30708	16	3.4	16	80	5	56	40	5	27	27	1.78
31261--31453	14	13.1	14	71	19	85	74	4	7	14	1.19
31294--31419	44	3.0	42	75	17	113	76	3	5	14	1.12
31334--31422	19	4.9	17	68	22	56	76	3	4	15	1.08
31390--31432	22	2.0	22	86	9	61	76	2	2	18	1.00
31330--31432	17	5.7	18	72	18	54	75	4	3	15	1.11
31315--31478	28	6.0	27	70	20	78	75	3	7	14	1.16
31498--31525	4	7.0	4	100	0	56	75	0	0	25	0.81
31498--31569	17	4.1	17	75	15	58	70	1	1	26	1.03
36779--36820	22	2.0	22	85	4	59	50	2	0	47	1.14
39239--39398	65	2.5	64	83	6	191	31	26	15	27	1.95
47930--47968	19	2.1	19	95	0	69	20	38	15	25	1.92
47916--48078	65	2.5	65	85	3	222	30	26	15	26	1.96
49024--49068	6	6.7	7	82	12	51	53	0	4	42	1.21
49024--49071	14	3.7	12	78	15	51	54	0	4	41	1.20
49025--49077	26	2.0	28	85	7	74	56	0	3	39	1.17
49036--49074	21	1.9	21	84	5	53	58	0	5	35	1.20
49284--49317	13	2.6	13	100	0	68	8	17	0	73	1.08
55772--55804	14	2.3	15	94	5	59	30	9	6	54	1.56
57272--57342	15	4.7	15	76	13	74	33	5	18	42	1.74
57728--57771	23	1.9	23	90	0	70	20	29	20	29	1.98
63409--63616	103	2.0	104	88	3	312	44	11	7	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64721--64756	3	12.0	3	88	11	56	66	0	0	33	0.92
64715--64757	19	2.5	16	80	20	59	65	0	0	34	0.93
64915--66040	111	10.1	111	91	3	1633	28	17	24	29	1.97
66169--66441	34	8.0	34	91	0	429	28	16	21	32	1.95
69073--69111	11	3.7	11	83	13	55	7	10	0	82	0.86
69067--69122	20	2.8	21	86	8	80	7	14	0	78	0.95
69083--69122	14	2.7	15	84	11	55	7	10	0	82	0.84
74942--74970	14	2.1	14	100	0	58	44	27	0	27	1.54
77569--77773	103	2.0	107	87	5	303	44	11	6	37	1.67
78851--78895	3	15.0	3	90	9	74	66	0	0	33	0.92
78852--78889	19	2.0	19	100	0	76	63	0	0	36	0.95
79855--79887	14	2.3	15	89	5	50	51	0	0	48	1.00
84959--85011	23	2.3	22	78	18	63	43	0	1	54	1.11
85122--85183	23	2.9	22	88	7	83	59	1	1	37	1.17
85164--85239	34	2.2	34	81	11	93	53	2	1	42	1.23
105073--105108	13	2.8	13	91	8	56	41	2	8	47	1.48
107712--108200	36	13.8	36	82	9	575	46	6	2	44	1.43
107818--108239	139	3.1	136	82	10	368	45	6	3	44	1.46
108764--109648	84	10.7	84	77	8	687	25	19	23	31	1.98
108757--109662	248	3.7	247	82	4	1014	25	19	23	32	1.98
108785--109648	165	5.3	166	77	9	693	25	19	23	31	1.98

Tables:   1

The End!